Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq122 271 1e-70
>seq122
Length=4874392
Score = 271 bits (300), Expect = 1e-70
Identities = 219/265 (83%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| |||||||||| |||||| |||||| |||| |||||||| || || |||| |
Sbjct 4455193 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 4455134
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
||||| ||||| | |||||| ||| || || ||||||||||||||||| | ||
Sbjct 4455133 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTAGGAGCAA 4455074
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
| |||||||| | ||| |||||||| | |||||||||||||||||||| |||||||||
Sbjct 4455073 CCCCTCTCAATTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 4455014
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
|||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||
Sbjct 4455013 AACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACCCTTGGGACCTACTTCAGC 4454954
Query 251 CCCAGGATGAGACGAGCCGACATCG 275
||||||||| || ||||||||||||
Sbjct 4454953 CCCAGGATGTGATGAGCCGACATCG 4454929
Score = 271 bits (300), Expect = 1e-70
Identities = 219/265 (83%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| |||||||||| |||||| |||||| |||| |||||||| || || |||| |
Sbjct 4586806 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 4586747
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
||||| ||||| | |||||| ||| || || ||||||||||||||||| | ||
Sbjct 4586746 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTAGGAGCAA 4586687
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
| |||||||| | ||| |||||||| | |||||||||||||||||||| |||||||||
Sbjct 4586686 CCCCTCTCAATTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 4586627
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
|||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||
Sbjct 4586626 AACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACCCTTGGGACCTACTTCAGC 4586567
Query 251 CCCAGGATGAGACGAGCCGACATCG 275
||||||||| || ||||||||||||
Sbjct 4586566 CCCAGGATGTGATGAGCCGACATCG 4586542
Score = 271 bits (300), Expect = 1e-70
Identities = 219/265 (83%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| |||||||||| |||||| |||||| |||| |||||||| || || |||| |
Sbjct 4742311 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 4742252
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
||||| ||||| | |||||| ||| || || ||||||||||||||||| | ||
Sbjct 4742251 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTAGGAGCAA 4742192
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
| |||||||| | ||| |||||||| | |||||||||||||||||||| |||||||||
Sbjct 4742191 CCCCTCTCAATTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 4742132
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
|||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||
Sbjct 4742131 AACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACCCTTGGGACCTACTTCAGC 4742072
Query 251 CCCAGGATGAGACGAGCCGACATCG 275
||||||||| || ||||||||||||
Sbjct 4742071 CCCAGGATGTGATGAGCCGACATCG 4742047
Score = 91.5 bits (100), Expect = 2e-16
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| |||||||||| |||||| |||||| |||| |||||||| || || |||| |
Sbjct 3936025 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 3936084
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123
||||| ||||| | |||||| ||| || || |||||||||||||||||
Sbjct 3936085 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTA 3936137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780752626668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |