Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq122 271 1e-70 >seq122 Length=4874392 Score = 271 bits (300), Expect = 1e-70 Identities = 219/265 (83%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| |||| |||||||| || || |||| | Sbjct 4455193 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 4455134 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| ||||| | |||||| ||| || || ||||||||||||||||| | || Sbjct 4455133 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTAGGAGCAA 4455074 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | |||||||| | ||| |||||||| | |||||||||||||||||||| ||||||||| Sbjct 4455073 CCCCTCTCAATTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 4455014 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 4455013 AACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACCCTTGGGACCTACTTCAGC 4454954 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 4454953 CCCAGGATGTGATGAGCCGACATCG 4454929 Score = 271 bits (300), Expect = 1e-70 Identities = 219/265 (83%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| |||| |||||||| || || |||| | Sbjct 4586806 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 4586747 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| ||||| | |||||| ||| || || ||||||||||||||||| | || Sbjct 4586746 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTAGGAGCAA 4586687 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | |||||||| | ||| |||||||| | |||||||||||||||||||| ||||||||| Sbjct 4586686 CCCCTCTCAATTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 4586627 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 4586626 AACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACCCTTGGGACCTACTTCAGC 4586567 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 4586566 CCCAGGATGTGATGAGCCGACATCG 4586542 Score = 271 bits (300), Expect = 1e-70 Identities = 219/265 (83%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| |||| |||||||| || || |||| | Sbjct 4742311 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 4742252 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| ||||| | |||||| ||| || || ||||||||||||||||| | || Sbjct 4742251 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTAGGAGCAA 4742192 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | |||||||| | ||| |||||||| | |||||||||||||||||||| ||||||||| Sbjct 4742191 CCCCTCTCAATTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 4742132 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 4742131 AACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACCCTTGGGACCTACTTCAGC 4742072 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 4742071 CCCAGGATGTGATGAGCCGACATCG 4742047 Score = 91.5 bits (100), Expect = 2e-16 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| |||| |||||||| || || |||| | Sbjct 3936025 TTCGCGCTTAGATGCTTTCAGCGCTTATCTTTTCCGCACTTAGCTACCGGGCAATGCCAT 3936084 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||||| ||||| | |||||| ||| || || ||||||||||||||||| Sbjct 3936085 TGGCATGACAACCCGAACACCAGTGGTGCGTTCACTCCGGTCCTCTCGTACTA 3936137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780752626668