Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq380 163 5e-38 seq122 152 8e-35 seq874 75.2 2e-11 >seq380 Length=239961 Score = 163 bits (180), Expect = 5e-38 Identities = 202/275 (73%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 10 CGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCT 69 |||||||| ||||| | |||||||| | | |||| | | ||| ||||||| || Sbjct 182546 CGGCCGCTCGATTTTAGTATCTTCCCGACCT-TACTGCTTATCACTACCTTGCTACGGCT 182488 Query 70 GGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGC 129 |||||||||| ||||| || ||||| || | || || || || || || | | || Sbjct 182487 ATCATTGAACGTTGCCTCAACTCGGGTAGTCTTACTGCATGGACATGAAGGGGAAGGTGC 182428 Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189 || ||||| |||||| | ||||||||| | |||||||||||||| | | |||||||| Sbjct 182427 AGCAGGTAAAGTGATCGAAGCCTTCGGTCAAGTGGTGATCGGCGGCGATTTTGTGGTCGG 182368 Query 190 TATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGG 249 | | ||||| ||| || |||||||| | ||||||||||| | |||||||| || | Sbjct 182367 TTTAGTGGTTTTCATTATTCTGATGATTGTTAACTTTGTGGTCATCACCAAGGGGGCTGA 182308 Query 250 GCGGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 |||||||| ||||| || || |||||||||| Sbjct 182307 ACGGATTTCTGAGGTATCGGCTCGTTTTACCCTCG 182273 >seq122 Length=4874392 Score = 152 bits (168), Expect = 8e-35 Identities = 193/264 (73%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 14 CGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCA 73 ||||||| ||||| | |||||||| ||||||| | | | ||| | |||| ||||| Sbjct 1580846 CGCTGGAGTTCGCCGCTTTCCCGACC-ATTCTGCTGTTCTCCACCTTATTACGCCTGGCG 1580904 Query 74 TTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCC 133 | ||||| ||||||||||| | | || | | ||||| ||| || |||||| Sbjct 1580905 CTCAACGTGGCCTCCACGCGTATTATTCTGATGGAAGGCCACACCGGGGCGGCGGCTGCC 1580964 Query 134 GGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATC 193 || ||||| | | ||||| ||| | | || | |||||||||| || |||||||| Sbjct 1580965 GGACAGGTGGTGGAAGCCTTTGGTCACTTCCTGGTGGGCGGTAACTTCGCCATCGGTATC 1581024 Query 194 GTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGG 253 |||||||| |||||| | |||||||||||| |||| | |||||||| |||||||| Sbjct 1581025 GTGGTGTTTATCATCCTGGTCATCATCAACTTTATGGTCATTACCAAGGGTGCCGGGCGT 1581084 Query 254 ATTTCCGAGGTGAGCGCGCGGTTT 277 ||| |||| ||| ||||||| ||| Sbjct 1581085 ATTGCCGAAGTGGGCGCGCGCTTT 1581108 Score = 134 bits (148), Expect = 2e-29 Identities = 193/271 (71%), Gaps = 1/271 (0%) Strand=Plus/Plus Query 14 CGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCA 73 ||||||| ||| ||| ||||||||| | |||| | | | || ||||| || ||||| Sbjct 3279729 CGCTGGAATTCTCGGCATTCCCGACGG-TGCTGCTGTTCTCCACGCTGCTGCGCCTGGCG 3279787 Query 74 TTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCC 133 |||| ||||||||||||||||| | || | | ||||| |||| | || || Sbjct 3279788 CTGAATGTCGCCTCCACGCGGGTAATCCTGATGGAAGGCCACACCGGCACCGGAGCCGCA 3279847 Query 134 GGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATC 193 || ||| | | ||||| ||| | | || | |||||||| | || |||| ||| Sbjct 3279848 GGCGCGGTAGTTGAAGCCTTTGGTAACTTCCTGGTGGGCGGTAATTTCGCCATCGGCATC 3279907 Query 194 GTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGG 253 | |||||| || |||| ||||| |||||| ||||| | |||||||| |||||||| Sbjct 3279908 ATTGTGTTCATCATTTTGATCATCATTAACTTTATGGTGATCACCAAGGGTGCCGGGCGT 3279967 Query 254 ATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 || |||| ||| |||| || |||||||||| Sbjct 3279968 ATCGCCGAAGTGGGCGCTCGCTTTACCCTCG 3279998 >seq874 Length=41103 Score = 75.2 bits (82), Expect = 2e-11 Identities = 88/119 (74%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 125 GCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTG 184 || || || ||| |||| || ||||||| || | | || | |||||||| | | Sbjct 35370 GCGGCGGCGGGTCAGGTTATTGAGGCCTTTGGCCACTTCTTGGTGGGCGGTAATTTTGCC 35429 Query 185 GTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGG 243 ||||||||||||||||| |||||||| | ||||||||| ||||| | |||||||| Sbjct 35430 ATCGGTATCGTGGTGTTCATCATCCTGATTGTGATCAACTTTATGGTGATTACCAAGGG 35488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809550879291