Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01002011.1
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
seq380 163 5e-38
seq122 152 8e-35
seq874 75.2 2e-11
>seq380
Length=239961
Score = 163 bits (180), Expect = 5e-38
Identities = 202/275 (73%), Gaps = 1/275 (0%)
Strand=Plus/Minus
Query 10 CGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCT 69
|||||||| ||||| | |||||||| | | |||| | | ||| ||||||| ||
Sbjct 182546 CGGCCGCTCGATTTTAGTATCTTCCCGACCT-TACTGCTTATCACTACCTTGCTACGGCT 182488
Query 70 GGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGC 129
|||||||||| ||||| || ||||| || | || || || || || || | | ||
Sbjct 182487 ATCATTGAACGTTGCCTCAACTCGGGTAGTCTTACTGCATGGACATGAAGGGGAAGGTGC 182428
Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189
|| ||||| |||||| | ||||||||| | |||||||||||||| | | ||||||||
Sbjct 182427 AGCAGGTAAAGTGATCGAAGCCTTCGGTCAAGTGGTGATCGGCGGCGATTTTGTGGTCGG 182368
Query 190 TATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGG 249
| | ||||| ||| || |||||||| | ||||||||||| | |||||||| || |
Sbjct 182367 TTTAGTGGTTTTCATTATTCTGATGATTGTTAACTTTGTGGTCATCACCAAGGGGGCTGA 182308
Query 250 GCGGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284
|||||||| ||||| || || ||||||||||
Sbjct 182307 ACGGATTTCTGAGGTATCGGCTCGTTTTACCCTCG 182273
>seq122
Length=4874392
Score = 152 bits (168), Expect = 8e-35
Identities = 193/264 (73%), Gaps = 1/264 (0%)
Strand=Plus/Plus
Query 14 CGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCA 73
||||||| ||||| | |||||||| ||||||| | | | ||| | |||| |||||
Sbjct 1580846 CGCTGGAGTTCGCCGCTTTCCCGACC-ATTCTGCTGTTCTCCACCTTATTACGCCTGGCG 1580904
Query 74 TTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCC 133
| ||||| ||||||||||| | | || | | ||||| ||| || ||||||
Sbjct 1580905 CTCAACGTGGCCTCCACGCGTATTATTCTGATGGAAGGCCACACCGGGGCGGCGGCTGCC 1580964
Query 134 GGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATC 193
|| ||||| | | ||||| ||| | | || | |||||||||| || ||||||||
Sbjct 1580965 GGACAGGTGGTGGAAGCCTTTGGTCACTTCCTGGTGGGCGGTAACTTCGCCATCGGTATC 1581024
Query 194 GTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGG 253
|||||||| |||||| | |||||||||||| |||| | |||||||| ||||||||
Sbjct 1581025 GTGGTGTTTATCATCCTGGTCATCATCAACTTTATGGTCATTACCAAGGGTGCCGGGCGT 1581084
Query 254 ATTTCCGAGGTGAGCGCGCGGTTT 277
||| |||| ||| ||||||| |||
Sbjct 1581085 ATTGCCGAAGTGGGCGCGCGCTTT 1581108
Score = 134 bits (148), Expect = 2e-29
Identities = 193/271 (71%), Gaps = 1/271 (0%)
Strand=Plus/Plus
Query 14 CGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCA 73
||||||| ||| ||| ||||||||| | |||| | | | || ||||| || |||||
Sbjct 3279729 CGCTGGAATTCTCGGCATTCCCGACGG-TGCTGCTGTTCTCCACGCTGCTGCGCCTGGCG 3279787
Query 74 TTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCC 133
|||| ||||||||||||||||| | || | | ||||| |||| | || ||
Sbjct 3279788 CTGAATGTCGCCTCCACGCGGGTAATCCTGATGGAAGGCCACACCGGCACCGGAGCCGCA 3279847
Query 134 GGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATC 193
|| ||| | | ||||| ||| | | || | |||||||| | || |||| |||
Sbjct 3279848 GGCGCGGTAGTTGAAGCCTTTGGTAACTTCCTGGTGGGCGGTAATTTCGCCATCGGCATC 3279907
Query 194 GTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGG 253
| |||||| || |||| ||||| |||||| ||||| | |||||||| ||||||||
Sbjct 3279908 ATTGTGTTCATCATTTTGATCATCATTAACTTTATGGTGATCACCAAGGGTGCCGGGCGT 3279967
Query 254 ATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284
|| |||| ||| |||| || ||||||||||
Sbjct 3279968 ATCGCCGAAGTGGGCGCTCGCTTTACCCTCG 3279998
>seq874
Length=41103
Score = 75.2 bits (82), Expect = 2e-11
Identities = 88/119 (74%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 125 GCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTG 184
|| || || ||| |||| || ||||||| || | | || | |||||||| | |
Sbjct 35370 GCGGCGGCGGGTCAGGTTATTGAGGCCTTTGGCCACTTCTTGGTGGGCGGTAATTTTGCC 35429
Query 185 GTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGG 243
||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||
Sbjct 35430 ATCGGTATCGTGGTGTTCATCATCCTGATTGTGATCAACTTTATGGTGATTACCAAGGG 35488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 809550879291
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |