Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq122 302 1e-79
>seq122
Length=4874392
Score = 302 bits (334), Expect = 1e-79
Identities = 280/359 (78%), Gaps = 26/359 (7%)
Strand=Plus/Plus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
||||||||||| ||| |||||||||| ||| ||||||||||| |||| | |||||||
Sbjct 4450759 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 4450818
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286
| ||| | |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4450819 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 4450878
Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346
|||||||||||||||||| |||||||||||||| | |||||||| || |||||||||
Sbjct 4450879 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 4450938
Query 347 CGGGTCGTAAAGCTCTGTC------------CTCAAGGAAGATAA-------------TG 381
||||| |||||| || || | | |||| ||| ||
Sbjct 4450939 CGGGTTGTAAAGTACTTTCAGTGGGGAGGAAGGCGATGAAGTTAATAGCTTCGTCGATTG 4450998
Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441
||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 4450999 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 4451058
Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| || ||||||| |||||||||| |||||||||| | || ||| ||| | | |||||
Sbjct 4451059 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 4451116
Score = 302 bits (334), Expect = 1e-79
Identities = 280/359 (78%), Gaps = 26/359 (7%)
Strand=Plus/Plus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
||||||||||| ||| |||||||||| ||| ||||||||||| |||| | |||||||
Sbjct 4737877 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 4737936
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286
| ||| | |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4737937 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 4737996
Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346
|||||||||||||||||| |||||||||||||| | |||||||| || |||||||||
Sbjct 4737997 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 4738056
Query 347 CGGGTCGTAAAGCTCTGTC------------CTCAAGGAAGATAA-------------TG 381
||||| |||||| || || | | |||| ||| ||
Sbjct 4738057 CGGGTTGTAAAGTACTTTCAGTGGGGAGGAAGGCGAAGAAGTTAATAACCTCGTCGATTG 4738116
Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441
||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 4738117 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 4738176
Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| || ||||||| |||||||||| |||||||||| | || ||| ||| | | |||||
Sbjct 4738177 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 4738234
Score = 297 bits (328), Expect = 6e-78
Identities = 280/359 (78%), Gaps = 26/359 (7%)
Strand=Plus/Plus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
||||||||||| ||| |||||||||| ||| ||||||||||| |||| | |||||||
Sbjct 4582373 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 4582432
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286
| ||| | |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4582433 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 4582492
Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346
|||||||||||||||||| |||||||||||||| | |||||||| || |||||||||
Sbjct 4582493 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 4582552
Query 347 CGGGTCGTAAAGCTCTGTC---CTCAAGGAA---GAT-------------------AATG 381
||||| |||||| || || ||||| ||| | ||
Sbjct 4582553 CGGGTTGTAAAGTACTTTCAGTGGGGAGGAAGGCGATGGAGTTAATAGCTTCGTCGATTG 4582612
Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441
||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 4582613 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 4582672
Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| || ||||||| |||||||||| |||||||||| | || ||| ||| | | |||||
Sbjct 4582673 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 4582730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497506205312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |