Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq122 302 1e-79 >seq122 Length=4874392 Score = 302 bits (334), Expect = 1e-79 Identities = 280/359 (78%), Gaps = 26/359 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| ||| |||||||||| ||| ||||||||||| |||| | ||||||| Sbjct 4450759 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 4450818 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4450819 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 4450878 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||||||||||||| |||||||||||||| | |||||||| || ||||||||| Sbjct 4450879 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 4450938 Query 347 CGGGTCGTAAAGCTCTGTC------------CTCAAGGAAGATAA-------------TG 381 ||||| |||||| || || | | |||| ||| || Sbjct 4450939 CGGGTTGTAAAGTACTTTCAGTGGGGAGGAAGGCGATGAAGTTAATAGCTTCGTCGATTG 4450998 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 4450999 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 4451058 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || ||||||| |||||||||| |||||||||| | || ||| ||| | | ||||| Sbjct 4451059 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 4451116 Score = 302 bits (334), Expect = 1e-79 Identities = 280/359 (78%), Gaps = 26/359 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| ||| |||||||||| ||| ||||||||||| |||| | ||||||| Sbjct 4737877 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 4737936 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4737937 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 4737996 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||||||||||||| |||||||||||||| | |||||||| || ||||||||| Sbjct 4737997 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 4738056 Query 347 CGGGTCGTAAAGCTCTGTC------------CTCAAGGAAGATAA-------------TG 381 ||||| |||||| || || | | |||| ||| || Sbjct 4738057 CGGGTTGTAAAGTACTTTCAGTGGGGAGGAAGGCGAAGAAGTTAATAACCTCGTCGATTG 4738116 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 4738117 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 4738176 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || ||||||| |||||||||| |||||||||| | || ||| ||| | | ||||| Sbjct 4738177 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 4738234 Score = 297 bits (328), Expect = 6e-78 Identities = 280/359 (78%), Gaps = 26/359 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| ||| |||||||||| ||| ||||||||||| |||| | ||||||| Sbjct 4582373 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 4582432 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4582433 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 4582492 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||||||||||||| |||||||||||||| | |||||||| || ||||||||| Sbjct 4582493 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 4582552 Query 347 CGGGTCGTAAAGCTCTGTC---CTCAAGGAA---GAT-------------------AATG 381 ||||| |||||| || || ||||| ||| | || Sbjct 4582553 CGGGTTGTAAAGTACTTTCAGTGGGGAGGAAGGCGATGGAGTTAATAGCTTCGTCGATTG 4582612 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 4582613 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 4582672 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || ||||||| |||||||||| |||||||||| | || ||| ||| | | ||||| Sbjct 4582673 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 4582730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497506205312