Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq122 340 4e-91 seq705 84.2 5e-14 >seq122 Length=4874392 Score = 340 bits (376), Expect = 4e-91 Identities = 316/400 (79%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 4451011 GAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 4451070 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||| | || ||| ||| | | ||||| || |||||| | Sbjct 4451071 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGGATGTGAAATCCC 4451130 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| || ||||| || ||||||| ||||||||| | || || || Sbjct 4451131 CGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAGAGGGGGGTA 4451190 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| |||||||||||||||||||||| || ||||||| ||| |||||||||||| Sbjct 4451191 GAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCG 4451250 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || |||||| |||||| || ||| |||||||||||||||||||||||||||||| Sbjct 4451251 GCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 4451310 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 |||||||||||||||||||||||||||| ||| || | | || | | || || | Sbjct 4451311 ACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAG-GCGTGG 4451369 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| ||| ||||| ||||| || ||||||||||| Sbjct 4451370 CTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTA 4451409 Score = 340 bits (376), Expect = 4e-91 Identities = 316/400 (79%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 4582625 GAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 4582684 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||| | || ||| ||| | | ||||| || |||||| | Sbjct 4582685 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGGATGTGAAATCCC 4582744 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| || ||||| || ||||||| ||||||||| | || || || Sbjct 4582745 CGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAGAGGGGGGTA 4582804 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| |||||||||||||||||||||| || ||||||| ||| |||||||||||| Sbjct 4582805 GAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCG 4582864 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || |||||| |||||| || ||| |||||||||||||||||||||||||||||| Sbjct 4582865 GCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 4582924 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 |||||||||||||||||||||||||||| ||| || | | || | | || || | Sbjct 4582925 ACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAG-GCGTGG 4582983 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| ||| ||||| ||||| || ||||||||||| Sbjct 4582984 CTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTA 4583023 Score = 334 bits (370), Expect = 2e-89 Identities = 315/400 (79%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 4738129 GAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 4738188 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||| | || ||| ||| | | ||||| || |||||| | Sbjct 4738189 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGGATGTGAAATCCC 4738248 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| || ||||| || ||||||| ||||||||| | || || || Sbjct 4738249 CGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAGAGGGGGGTA 4738308 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| |||||||||||||||||||||| || ||||||| ||| |||||||||||| Sbjct 4738309 GAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCG 4738368 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || |||||| |||||| || ||| |||||||||||||||||||||||||||||| Sbjct 4738369 GCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 4738428 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 |||||||||||||||||||||||||||| ||| || | | || | | || | | Sbjct 4738429 ACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAG-GAGTGG 4738487 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| ||| ||||| ||||| || ||||||||||| Sbjct 4738488 CTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTA 4738527 >seq705 Length=31904 Score = 84.2 bits (92), Expect = 5e-14 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 |||||||| | |||| | | |||| | |||| ||||||| || ||||||||| Sbjct 25770 GAATTCCTGGAGTAGAGATAAAATTTTTTGATACCAGGAGGACTGTCAACGGCGAAGGCA 25711 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | || |||||||| |||| |||| || |||| ||||||||||||||||| Sbjct 25710 TCCTTCTATGTAATAACTGACGTTGAGAGACGAAGGCTTGGGTAGCAAACAGGATTAGAT 25651 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAAT 339 ||||| ||||||| || | || ||||||| Sbjct 25650 ACCCTAATAGTCCAAGCAGACAATGATGAAT 25620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203124643584