Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq385 412 7e-113
seq871 407 3e-111
seq228 210 4e-52
seq183 109 1e-21
seq249 80.6 5e-13
>seq385
Length=166179
Score = 412 bits (456), Expect = 7e-113
Identities = 280/312 (90%), Gaps = 3/312 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGG--TCGCCGGCTTCTT 77
|| ||||||||||||||||||||||||| | | |||||| || || ||||||||
Sbjct 161847 GAACGAGACCTTAACCTGCTAAATAGCCGAGTCGACTTTGGTTGGCTTCTTTGGCTTCTT 161906
Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136
|||||||||||| | | || |||||||||||||||||||||||||||||||||||||
Sbjct 161907 AGAGGGACTATCTACGTTTAGTAGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 161966
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 161967 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTTTTTTCCTTGT 162026
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162027 CCGGAAGGACTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 162086
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 162087 TTGCTCTTCAACGAGGAATTCCTAGTAAGCGTAAGTCATCAGCTTGCGTTGATTACGTCC 162146
Query 317 CTGCCCTTTGTA 328
||||||||||||
Sbjct 162147 CTGCCCTTTGTA 162158
>seq871
Length=10861
Score = 407 bits (450), Expect = 3e-111
Identities = 264/290 (91%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98
||||||||| || |||| || ||||| ||| |||||||||| ||||||||||||||||||
Sbjct 2035 TAAATAGCCCGGTCCGCATTTGCGGGCCGCTGGCTTCTTAGGGGGACTATCGGCTCAAGC 2094
Query 99 CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 158
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 CGATGGAAGTGCGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 2154
Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218
||||||||||||||| |||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct 2155 GCGCTACACTGACAGGGCCAGCGAGTACATCACCTTAACCGAGAGGCCTGGGTAATCTTG 2214
Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TTAAACCCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 2274
Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| || || ||||||||| || | ||||||||||||||||||||||
Sbjct 2275 TAGTAGGCACGAGTCATCAGCTCGTGCCGATTACGTCCCTGCCCTTTGTA 2324
>seq228
Length=334299
Score = 210 bits (232), Expect = 4e-52
Identities = 205/258 (79%), Gaps = 6/258 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||||||||||
Sbjct 79878 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 79935
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||| ||||||| ||| | || || || | ||
Sbjct 79936 ATGCCCTTAGATGTTCTGGGCCGCACGCACGCTACAATGAAGGTATCAGCGTGTCC-TCT 79994
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| ||||| |||||| |||||| | | |||| | ||||||| ||||| | | |||
Sbjct 79995 CC--GGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 80052
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||| || | | | | |||||||| || ||||| ||||||||| ||||||| ||||||
Sbjct 80053 AAATTGTTCCCCATGACCGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 80112
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 80113 ACGTCCCTGCCCTTTGTA 80130
>seq183
Length=415644
Score = 109 bits (120), Expect = 1e-21
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| |||||| |||||| |||||| | | |||| | ||||||| ||||| | | |||
Sbjct 264090 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 264031
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||| || | | | | |||||||| || ||||| ||||||||| ||||||| ||||||
Sbjct 264030 AAATTGTTCCCCATGACCGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 263971
Query 311 ACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||
Sbjct 263970 ACAACCCTGCCCTTTGTA 263953
>seq249
Length=313394
Score = 80.6 bits (88), Expect = 5e-13
Identities = 67/78 (86%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||||||||||
Sbjct 129527 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 129584
Query 131 ATGCCCTTAGATGTTCTG 148
||||||||||||||||||
Sbjct 129585 ATGCCCTTAGATGTTCTG 129602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947140676864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |