Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq385 412 7e-113 seq871 407 3e-111 seq228 210 4e-52 seq183 109 1e-21 seq249 80.6 5e-13 >seq385 Length=166179 Score = 412 bits (456), Expect = 7e-113 Identities = 280/312 (90%), Gaps = 3/312 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGG--TCGCCGGCTTCTT 77 || ||||||||||||||||||||||||| | | |||||| || || |||||||| Sbjct 161847 GAACGAGACCTTAACCTGCTAAATAGCCGAGTCGACTTTGGTTGGCTTCTTTGGCTTCTT 161906 Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 |||||||||||| | | || ||||||||||||||||||||||||||||||||||||| Sbjct 161907 AGAGGGACTATCTACGTTTAGTAGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 161966 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 161967 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTTTTTTCCTTGT 162026 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162027 CCGGAAGGACTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 162086 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| Sbjct 162087 TTGCTCTTCAACGAGGAATTCCTAGTAAGCGTAAGTCATCAGCTTGCGTTGATTACGTCC 162146 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 162147 CTGCCCTTTGTA 162158 >seq871 Length=10861 Score = 407 bits (450), Expect = 3e-111 Identities = 264/290 (91%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98 ||||||||| || |||| || ||||| ||| |||||||||| |||||||||||||||||| Sbjct 2035 TAAATAGCCCGGTCCGCATTTGCGGGCCGCTGGCTTCTTAGGGGGACTATCGGCTCAAGC 2094 Query 99 CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 158 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2095 CGATGGAAGTGCGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 2154 Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 ||||||||||||||| |||| ||||| ||||||||| ||| ||| ||||||||||||| Sbjct 2155 GCGCTACACTGACAGGGCCAGCGAGTACATCACCTTAACCGAGAGGCCTGGGTAATCTTG 2214 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2215 TTAAACCCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 2274 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || || ||||||||| || | |||||||||||||||||||||| Sbjct 2275 TAGTAGGCACGAGTCATCAGCTCGTGCCGATTACGTCCCTGCCCTTTGTA 2324 >seq228 Length=334299 Score = 210 bits (232), Expect = 4e-52 Identities = 205/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 79878 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 79935 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||| ||||||| ||| | || || || | || Sbjct 79936 ATGCCCTTAGATGTTCTGGGCCGCACGCACGCTACAATGAAGGTATCAGCGTGTCC-TCT 79994 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| |||||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 79995 CC--GGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 80052 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | | |||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 80053 AAATTGTTCCCCATGACCGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 80112 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 80113 ACGTCCCTGCCCTTTGTA 80130 >seq183 Length=415644 Score = 109 bits (120), Expect = 1e-21 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 264090 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 264031 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | | |||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 264030 AAATTGTTCCCCATGACCGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 263971 Query 311 ACGTCCCTGCCCTTTGTA 328 || |||||||||||||| Sbjct 263970 ACAACCCTGCCCTTTGTA 263953 >seq249 Length=313394 Score = 80.6 bits (88), Expect = 5e-13 Identities = 67/78 (86%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 129527 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 129584 Query 131 ATGCCCTTAGATGTTCTG 148 |||||||||||||||||| Sbjct 129585 ATGCCCTTAGATGTTCTG 129602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947140676864