Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq122 374 3e-101
>seq122
Length=4874392
Score = 374 bits (414), Expect = 3e-101
Identities = 377/483 (78%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| ||| ||||| | || || |||| ||||||||||||| |||||||| ||||
Sbjct 4453060 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 4453119
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
|| |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 4453120 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 4453179
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
||| |||||| ||||| | |||||||||||| || ||||| ||| |||||||||||||
Sbjct 4453180 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 4453239
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239
|||||| |||||||||||| ||||| | | ||| | ||||||||||||||||||| |
Sbjct 4453240 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTTCGGGGGTAGAGCACTGTTTCG 4453299
Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299
||||||||| ||| || |||||||| || |||||||| ||||| | | | | |||
Sbjct 4453300 GCTAGGGGGCCATCCCGGCTTACCAACCCGATGCAAACTGCGAATACCGAAGAATGTTAT 4453359
Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| |||||| | ||| ||||||||| |||||| ||||| || || || |||
Sbjct 4453360 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 4453417
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||| ||| || | | | ||||| | ||||| || || || |||||
Sbjct 4453418 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCACAGACA 4453475
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
|| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||
Sbjct 4453476 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 4453534
Query 478 GAG 480
|||
Sbjct 4453535 GAG 4453537
Score = 374 bits (414), Expect = 3e-101
Identities = 377/483 (78%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| ||| ||||| | || || |||| ||||||||||||| |||||||| ||||
Sbjct 4584673 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 4584732
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
|| |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 4584733 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 4584792
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
||| |||||| ||||| | |||||||||||| || ||||| ||| |||||||||||||
Sbjct 4584793 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 4584852
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239
|||||| |||||||||||| ||||| | | ||| | ||||||||||||||||||| |
Sbjct 4584853 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTTCGGGGGTAGAGCACTGTTTCG 4584912
Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299
||||||||| ||| || |||||||| || |||||||| ||||| | | | | |||
Sbjct 4584913 GCTAGGGGGCCATCCCGGCTTACCAACCCGATGCAAACTGCGAATACCGAAGAATGTTAT 4584972
Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| |||||| | ||| ||||||||| |||||| ||||| || || || |||
Sbjct 4584973 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 4585030
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||| ||| || | | | ||||| | ||||| || || || |||||
Sbjct 4585031 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCACAGACA 4585088
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
|| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||
Sbjct 4585089 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 4585147
Query 478 GAG 480
|||
Sbjct 4585148 GAG 4585150
Score = 374 bits (414), Expect = 3e-101
Identities = 377/483 (78%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| ||| ||||| | || || |||| ||||||||||||| |||||||| ||||
Sbjct 4740178 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 4740237
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
|| |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 4740238 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 4740297
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
||| |||||| ||||| | |||||||||||| || ||||| ||| |||||||||||||
Sbjct 4740298 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 4740357
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239
|||||| |||||||||||| ||||| | | ||| | ||||||||||||||||||| |
Sbjct 4740358 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTTCGGGGGTAGAGCACTGTTTCG 4740417
Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299
||||||||| ||| || |||||||| || |||||||| ||||| | | | | |||
Sbjct 4740418 GCTAGGGGGCCATCCCGGCTTACCAACCCGATGCAAACTGCGAATACCGAAGAATGTTAT 4740477
Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| |||||| | ||| ||||||||| |||||| ||||| || || || |||
Sbjct 4740478 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 4740535
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||| ||| || | | | ||||| | ||||| || || || |||||
Sbjct 4740536 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCACAGACA 4740593
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
|| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||
Sbjct 4740594 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 4740652
Query 478 GAG 480
|||
Sbjct 4740653 GAG 4740655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689494180352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |