Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq122 136 7e-30 >seq122 Length=4874392 Score = 136 bits (150), Expect = 7e-30 Identities = 187/255 (73%), Gaps = 15/255 (6%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| ||||||||||| ||| | | |||||||||||| ||| || |||||||||| Sbjct 4584059 ACACGGTGGATGCCTAGGCAGTCAGAGGCGATGAAGGGCGTGCTAATCTGCGATAAGCGT 4584118 Query 66 CGGGGAG-TGAGC--AAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCC 122 ||| || ||| || | || | | ||| ||| |||||||||||||||| | Sbjct 4584119 CGGTAAGGTGATATGAACCGCAAT---AACCGACGATACCCGAATGGGGAAACCCAGTGT 4584175 Query 123 TTTGGGTCA---TTGCATGC--TGAATACATA--GGTATGCAAAGCGAACGCGGCGAACT 175 | |||| | |||| |||||||||| || ||| | |||||| || ||||| Sbjct 4584176 GATACGTCACACTATCATGTCATGAATACATAGTGGCATG--AGGCGAACCGGGGGAACT 4584233 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 |||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||| Sbjct 4584234 GAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGC 4584293 Query 236 GAAATGGGATGAGCC 250 ||| |||| |||| Sbjct 4584294 GAACGGGGAACAGCC 4584308 Score = 131 bits (144), Expect = 3e-28 Identities = 186/255 (73%), Gaps = 15/255 (6%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| ||||||||||| ||| | | |||||||||||| ||| || |||||||||| Sbjct 4452445 ACACGGTGGATGCCTAGGCAGTCAGAGGCGATGAAGGGCGTGCTAATCTGCGATAAGCGT 4452504 Query 66 CGGGGAG-TGAGC--AAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCC 122 ||| || ||| || | || | ||| ||| |||||||||||||||| | Sbjct 4452505 CGGTAAGGTGATATGAACCGCAAC---AACCGACGATACCCGAATGGGGAAACCCAGTGT 4452561 Query 123 TTTGGGTCA---TTGCATGC--TGAATACATA--GGTATGCAAAGCGAACGCGGCGAACT 175 | |||| | |||| |||||||||| || ||| | |||||| || ||||| Sbjct 4452562 GATACGTCACACTATCATGTCATGAATACATAGTGGCATG--AGGCGAACCGGGGGAACT 4452619 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 |||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||| Sbjct 4452620 GAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGC 4452679 Query 236 GAAATGGGATGAGCC 250 ||| |||| |||| Sbjct 4452680 GAACGGGGAACAGCC 4452694 Score = 131 bits (144), Expect = 3e-28 Identities = 186/255 (73%), Gaps = 15/255 (6%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| ||||||||||| ||| | | |||||||||||| ||| || |||||||||| Sbjct 4739563 ACACGGTGGATGCCTAGGCAGTCAGAGGCGATGAAGGGCGTGCTAATCTGCGATAAGCGT 4739622 Query 66 CGGGGAG-TGAGC--AAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCC 122 ||| || ||| || | || | ||| ||| |||||||||||||||| | Sbjct 4739623 CGGTAAGGTGATATGAACCGCAAC---AACCGACGATACCCGAATGGGGAAACCCAGTGT 4739679 Query 123 TTTGGGTCA---TTGCATGC--TGAATACATA--GGTATGCAAAGCGAACGCGGCGAACT 175 | |||| | |||| |||||||||| || ||| | |||||| || ||||| Sbjct 4739680 GATACGTCACACTATCATGTCATGAATACATAGTGGCATG--AGGCGAACCGGGGGAACT 4739737 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 |||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||| Sbjct 4739738 GAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGC 4739797 Query 236 GAAATGGGATGAGCC 250 ||| |||| |||| Sbjct 4739798 GAACGGGGAACAGCC 4739812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918342480608