Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq871 836 0.0 seq385 381 2e-103 seq1582 199 1e-48 seq405 167 8e-39 seq55 163 9e-38 >seq871 Length=10861 Score = 836 bits (926), Expect = 0.0 Identities = 508/537 (95%), Gaps = 3/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5662 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTGTT 5603 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5602 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 5543 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| Sbjct 5542 GGCCCGCGAAGGACCTTAACGCCAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGA 5483 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||| ||||||||||||||||| |||||| | |||||||| || Sbjct 5482 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTA 5426 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 5425 TTCTACACCCCATATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 5366 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5365 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 5306 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 5305 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATT 5246 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 5245 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCT 5186 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5185 TCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 5129 >seq385 Length=166179 Score = 381 bits (422), Expect = 2e-103 Identities = 217/221 (98%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166178 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 166119 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 166118 CGTTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTACCTTAAGAGA 166059 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 166058 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAG 165999 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 165998 AGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 165958 Score = 210 bits (232), Expect = 7e-52 Identities = 131/141 (93%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||||| | |||| | |||| ||||||||||| | | |||||| Sbjct 136692 CTCAACAGGGTCTTCTTTCCCCACCGATTTCTGCAAGTCCGTTCCCTTGCCAGCGGTTTC 136633 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 136632 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTT 136573 Query 412 AGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||| Sbjct 136572 AGATGACGAGGCATTTGGCTA 136552 >seq1582 Length=19937 Score = 199 bits (220), Expect = 1e-48 Identities = 125/135 (93%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||| | |||| | |||| ||||||||||| | | |||||||||||| Sbjct 10665 AGGGTCTTCTTTCCCCACCGATTTCTGCAAGTCCGTTCCCTTGCCAGCGGTTTCGCTAGA 10606 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 10605 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTTAGATGA 10546 Query 418 CGAGGCATTTGGCTA 432 ||||||||||||||| Sbjct 10545 CGAGGCATTTGGCTA 10531 Score = 172 bits (190), Expect = 2e-40 Identities = 98/100 (98%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 563 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTT 504 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||| Sbjct 503 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 464 >seq405 Length=167269 Score = 167 bits (184), Expect = 8e-39 Identities = 95/97 (98%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 93567 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGAC 93626 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||| Sbjct 93627 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 93663 >seq55 Length=1321006 Score = 163 bits (180), Expect = 9e-38 Identities = 95/98 (97%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1030571 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGA 1030512 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||| |||||||||||||||||||||| Sbjct 1030511 CATTCAGAGCACTGGACAGAAATCACATTGCGTCAACA 1030474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635097587424