Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq122 338 2e-90 >seq122 Length=4874392 Score = 338 bits (374), Expect = 2e-90 Identities = 415/556 (75%), Gaps = 18/556 (3%) Strand=Plus/Minus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | || Sbjct 4454782 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 4454723 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 |||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 4454722 CTAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4454664 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGAT-ATCCACTACGGTCA-GA 190 |||| ||||||||||| || ||||| || | |||||||| ||| | ||| | | | Sbjct 4454663 CCAGACACTGTCCCCACGCCGGATCACGGCGCCAGGTTAGAACATCAA--ACGTTAAAGG 4454606 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 |||||||||||| | |||||| ||| |||| ||| ||| || |||||||||| Sbjct 4454605 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 4454546 Query 251 TCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCT 307 ||||||||| | || | |||| || | |||||| |||| ||||| | |||||||| Sbjct 4454545 TCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTGTAGTAAAGGTTCACGGGGTCT 4454488 Query 308 TTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTG 367 || |||| ||||||| | | ||||||| || | | ||||||||| | | || | Sbjct 4454487 TTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGG 4454428 Query 368 GTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 427 || |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 4454427 GTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 4454368 Query 428 ATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCC 487 ||||||||||||||||| ||||||||||| ||||||||||| |||||||| || | Sbjct 4454367 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 4454308 Query 488 GCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCG 547 || || | | || | | || | |||||||||| |||||||||||||| Sbjct 4454307 GCTTCTC------CTTG--CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCG 4454256 Query 548 TCAGTCCGTATACCTC 563 ||| |||||||| || Sbjct 4454255 TCACACCGTATACGTC 4454240 Score = 338 bits (374), Expect = 2e-90 Identities = 415/556 (75%), Gaps = 18/556 (3%) Strand=Plus/Minus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | || Sbjct 4586395 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 4586336 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 |||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 4586335 CTAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4586277 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGAT-ATCCACTACGGTCA-GA 190 |||| ||||||||||| || ||||| || | |||||||| ||| | ||| | | | Sbjct 4586276 CCAGACACTGTCCCCACGCCGGATCACGGCGCCAGGTTAGAACATCAA--ACGTTAAAGG 4586219 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 |||||||||||| | |||||| ||| |||| ||| ||| || |||||||||| Sbjct 4586218 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 4586159 Query 251 TCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCT 307 ||||||||| | || | |||| || | |||||| |||| ||||| | |||||||| Sbjct 4586158 TCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTGTAGTAAAGGTTCACGGGGTCT 4586101 Query 308 TTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTG 367 || |||| ||||||| | | ||||||| || | | ||||||||| | | || | Sbjct 4586100 TTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGG 4586041 Query 368 GTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 427 || |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 4586040 GTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 4585981 Query 428 ATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCC 487 ||||||||||||||||| ||||||||||| ||||||||||| |||||||| || | Sbjct 4585980 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 4585921 Query 488 GCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCG 547 || || | | || | | || | |||||||||| |||||||||||||| Sbjct 4585920 GCTTCTC------CTTG--CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCG 4585869 Query 548 TCAGTCCGTATACCTC 563 ||| |||||||| || Sbjct 4585868 TCACACCGTATACGTC 4585853 Score = 338 bits (374), Expect = 2e-90 Identities = 415/556 (75%), Gaps = 18/556 (3%) Strand=Plus/Minus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | || Sbjct 4741900 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 4741841 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 |||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 4741840 CTAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4741782 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGAT-ATCCACTACGGTCA-GA 190 |||| ||||||||||| || ||||| || | |||||||| ||| | ||| | | | Sbjct 4741781 CCAGACACTGTCCCCACGCCGGATCACGGCGCCAGGTTAGAACATCAA--ACGTTAAAGG 4741724 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 |||||||||||| | |||||| ||| |||| ||| ||| || |||||||||| Sbjct 4741723 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 4741664 Query 251 TCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCT 307 ||||||||| | || | |||| || | |||||| |||| ||||| | |||||||| Sbjct 4741663 TCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTGTAGTAAAGGTTCACGGGGTCT 4741606 Query 308 TTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTG 367 || |||| ||||||| | | ||||||| || | | ||||||||| | | || | Sbjct 4741605 TTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGG 4741546 Query 368 GTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 427 || |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 4741545 GTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 4741486 Query 428 ATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCC 487 ||||||||||||||||| ||||||||||| ||||||||||| |||||||| || | Sbjct 4741485 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 4741426 Query 488 GCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCG 547 || || | | || | | || | |||||||||| |||||||||||||| Sbjct 4741425 GCTTCTC------CTTG--CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCG 4741374 Query 548 TCAGTCCGTATACCTC 563 ||| |||||||| || Sbjct 4741373 TCACACCGTATACGTC 4741358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702293378688