Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq122 338 2e-90
>seq122
Length=4874392
Score = 338 bits (374), Expect = 2e-90
Identities = 415/556 (75%), Gaps = 18/556 (3%)
Strand=Plus/Minus
Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72
||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | ||
Sbjct 4454782 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 4454723
Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132
|||||| | || |||||||||| ||| ||||| | |||||||||| ||||||||||
Sbjct 4454722 CTAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4454664
Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGAT-ATCCACTACGGTCA-GA 190
|||| ||||||||||| || ||||| || | |||||||| ||| | ||| | | |
Sbjct 4454663 CCAGACACTGTCCCCACGCCGGATCACGGCGCCAGGTTAGAACATCAA--ACGTTAAAGG 4454606
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
|||||||||||| | |||||| ||| |||| ||| ||| || ||||||||||
Sbjct 4454605 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 4454546
Query 251 TCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCT 307
||||||||| | || | |||| || | |||||| |||| ||||| | ||||||||
Sbjct 4454545 TCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTGTAGTAAAGGTTCACGGGGTCT 4454488
Query 308 TTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTG 367
|| |||| ||||||| | | ||||||| || | | ||||||||| | | || |
Sbjct 4454487 TTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGG 4454428
Query 368 GTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 427
|| |||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 4454427 GTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 4454368
Query 428 ATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCC 487
||||||||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct 4454367 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 4454308
Query 488 GCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCG 547
|| || | | || | | || | |||||||||| ||||||||||||||
Sbjct 4454307 GCTTCTC------CTTG--CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCG 4454256
Query 548 TCAGTCCGTATACCTC 563
||| |||||||| ||
Sbjct 4454255 TCACACCGTATACGTC 4454240
Score = 338 bits (374), Expect = 2e-90
Identities = 415/556 (75%), Gaps = 18/556 (3%)
Strand=Plus/Minus
Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72
||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | ||
Sbjct 4586395 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 4586336
Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132
|||||| | || |||||||||| ||| ||||| | |||||||||| ||||||||||
Sbjct 4586335 CTAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4586277
Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGAT-ATCCACTACGGTCA-GA 190
|||| ||||||||||| || ||||| || | |||||||| ||| | ||| | | |
Sbjct 4586276 CCAGACACTGTCCCCACGCCGGATCACGGCGCCAGGTTAGAACATCAA--ACGTTAAAGG 4586219
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
|||||||||||| | |||||| ||| |||| ||| ||| || ||||||||||
Sbjct 4586218 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 4586159
Query 251 TCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCT 307
||||||||| | || | |||| || | |||||| |||| ||||| | ||||||||
Sbjct 4586158 TCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTGTAGTAAAGGTTCACGGGGTCT 4586101
Query 308 TTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTG 367
|| |||| ||||||| | | ||||||| || | | ||||||||| | | || |
Sbjct 4586100 TTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGG 4586041
Query 368 GTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 427
|| |||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 4586040 GTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 4585981
Query 428 ATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCC 487
||||||||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct 4585980 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 4585921
Query 488 GCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCG 547
|| || | | || | | || | |||||||||| ||||||||||||||
Sbjct 4585920 GCTTCTC------CTTG--CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCG 4585869
Query 548 TCAGTCCGTATACCTC 563
||| |||||||| ||
Sbjct 4585868 TCACACCGTATACGTC 4585853
Score = 338 bits (374), Expect = 2e-90
Identities = 415/556 (75%), Gaps = 18/556 (3%)
Strand=Plus/Minus
Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72
||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | ||
Sbjct 4741900 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 4741841
Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132
|||||| | || |||||||||| ||| ||||| | |||||||||| ||||||||||
Sbjct 4741840 CTAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4741782
Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGAT-ATCCACTACGGTCA-GA 190
|||| ||||||||||| || ||||| || | |||||||| ||| | ||| | | |
Sbjct 4741781 CCAGACACTGTCCCCACGCCGGATCACGGCGCCAGGTTAGAACATCAA--ACGTTAAAGG 4741724
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
|||||||||||| | |||||| ||| |||| ||| ||| || ||||||||||
Sbjct 4741723 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 4741664
Query 251 TCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCT 307
||||||||| | || | |||| || | |||||| |||| ||||| | ||||||||
Sbjct 4741663 TCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTGTAGTAAAGGTTCACGGGGTCT 4741606
Query 308 TTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTG 367
|| |||| ||||||| | | ||||||| || | | ||||||||| | | || |
Sbjct 4741605 TTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGG 4741546
Query 368 GTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 427
|| |||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 4741545 GTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 4741486
Query 428 ATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCC 487
||||||||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct 4741485 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 4741426
Query 488 GCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCG 547
|| || | | || | | || | |||||||||| ||||||||||||||
Sbjct 4741425 GCTTCTC------CTTG--CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCG 4741374
Query 548 TCAGTCCGTATACCTC 563
||| |||||||| ||
Sbjct 4741373 TCACACCGTATACGTC 4741358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702293378688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |