Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq122 185 2e-44
>seq122
Length=4874392
Score = 185 bits (204), Expect = 2e-44
Identities = 217/287 (76%), Gaps = 11/287 (4%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGTACAT--AC-AAGCTC 52
||||||||||||||||||||||| ||||| ||| ||| || || || |||||
Sbjct 4451043 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATCGACGAAGCTA 4450984
Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112
| || | | | || |||| | |||| | ||||||| ||| || ||||| ||
Sbjct 4450983 TTA-ACTTC-ATCGCCTTCCTCCCCACTGAAAGTACTTTACAACCCGAAGG-CCTTCTTC 4450927
Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172
| ||||| | |||||| |||| || || |||||| ||||||||| ||||||||||
Sbjct 4450926 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 4450867
Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232
|||||||||||| |||||||||||||||||||| ||||| | | |||||||||| |
Sbjct 4450866 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 4450807
Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| ||||| | ||||||| ||||||||||| ||||||| |||||
Sbjct 4450806 CTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAAT 4450760
Score = 185 bits (204), Expect = 2e-44
Identities = 217/287 (76%), Gaps = 11/287 (4%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGTACAT--AC-AAGCTC 52
||||||||||||||||||||||| ||||| ||| ||| || || || |||||
Sbjct 4582657 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATCGACGAAGCTA 4582598
Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112
| || | | | || |||| | |||| | ||||||| ||| || ||||| ||
Sbjct 4582597 TTA-AC-TCCATCGCCTTCCTCCCCACTGAAAGTACTTTACAACCCGAAGG-CCTTCTTC 4582541
Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172
| ||||| | |||||| |||| || || |||||| ||||||||| ||||||||||
Sbjct 4582540 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 4582481
Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232
|||||||||||| |||||||||||||||||||| ||||| | | |||||||||| |
Sbjct 4582480 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 4582421
Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| ||||| | ||||||| ||||||||||| ||||||| |||||
Sbjct 4582420 CTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAAT 4582374
Score = 178 bits (196), Expect = 3e-42
Identities = 159/198 (80%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
|||| | ||||||| ||| || ||||| || | ||||| | |||||| |||| ||
Sbjct 4738074 AAAGTACTTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTG 4738016
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 4738015 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 4737956
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261
|||| ||||| | | |||||||||| | ||| ||||| | ||||||| |||||||
Sbjct 4737955 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTA 4737896
Query 262 CCCCGCCTACTACCTAAT 279
|||| ||||||| |||||
Sbjct 4737895 CCCCACCTACTAGCTAAT 4737878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068733061056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |