Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq122 185 2e-44 >seq122 Length=4874392 Score = 185 bits (204), Expect = 2e-44 Identities = 217/287 (76%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGTACAT--AC-AAGCTC 52 ||||||||||||||||||||||| ||||| ||| ||| || || || ||||| Sbjct 4451043 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATCGACGAAGCTA 4450984 Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | || | | | || |||| | |||| | ||||||| ||| || ||||| || Sbjct 4450983 TTA-ACTTC-ATCGCCTTCCTCCCCACTGAAAGTACTTTACAACCCGAAGG-CCTTCTTC 4450927 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 | ||||| | |||||| |||| || || |||||| ||||||||| |||||||||| Sbjct 4450926 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 4450867 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| |||||||||||||||||||| ||||| | | |||||||||| | Sbjct 4450866 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 4450807 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | ||||||| ||||||||||| ||||||| ||||| Sbjct 4450806 CTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAAT 4450760 Score = 185 bits (204), Expect = 2e-44 Identities = 217/287 (76%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGTACAT--AC-AAGCTC 52 ||||||||||||||||||||||| ||||| ||| ||| || || || ||||| Sbjct 4582657 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATCGACGAAGCTA 4582598 Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | || | | | || |||| | |||| | ||||||| ||| || ||||| || Sbjct 4582597 TTA-AC-TCCATCGCCTTCCTCCCCACTGAAAGTACTTTACAACCCGAAGG-CCTTCTTC 4582541 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 | ||||| | |||||| |||| || || |||||| ||||||||| |||||||||| Sbjct 4582540 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 4582481 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| |||||||||||||||||||| ||||| | | |||||||||| | Sbjct 4582480 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 4582421 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | ||||||| ||||||||||| ||||||| ||||| Sbjct 4582420 CTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAAT 4582374 Score = 178 bits (196), Expect = 3e-42 Identities = 159/198 (80%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||| | ||||||| ||| || ||||| || | ||||| | |||||| |||| || Sbjct 4738074 AAAGTACTTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTG 4738016 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 4738015 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 4737956 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 |||| ||||| | | |||||||||| | ||| ||||| | ||||||| ||||||| Sbjct 4737955 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTA 4737896 Query 262 CCCCGCCTACTACCTAAT 279 |||| ||||||| ||||| Sbjct 4737895 CCCCACCTACTAGCTAAT 4737878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068733061056