Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq871 188 1e-45 seq385 118 2e-24 >seq871 Length=10861 Score = 188 bits (208), Expect = 1e-45 Identities = 123/133 (92%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 5986 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 6043 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 6044 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 6103 Query 121 GAACGGGGTGATT 133 ||||| || |||| Sbjct 6104 GAACGCGGCGATT 6116 >seq385 Length=166179 Score = 118 bits (130), Expect = 2e-24 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 ||||||| ||||| ||||| || | ||||||| |||||||||||||||||||||| || Sbjct 159062 AATTGGTATTTGCCCCTGTCCGAACGGGCAGTGGGGCGAAGCTACCATCTGCTGGATAAT 159121 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 ||||||||||||||||| |||||||| ||| |||| Sbjct 159122 GGCTGAACGCCTCTAAGCCAGAATCCGTGCTAGAA 159156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819150296832