Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq660 113 2e-20 seq122 87.8 6e-13 >seq660 Length=103608 Score = 113 bits (124), Expect = 2e-20 Identities = 350/525 (67%), Gaps = 20/525 (4%) Strand=Plus/Minus Query 23577 CGTT-AACCAGCTCCAGCATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGC 23635 |||| |||||| || || ||| ||| | |||| || ||||||| ||| ||| Sbjct 8201 CGTTCAACCAGTTCTGCCAGATCCCGGTGATGAATATGTTTCTGCAGCAGGGTCAGGGCG 8142 Query 23636 GCCACCCGGCGATGGGTCAGG-ATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGG 23694 |||| | ||| ||| || | |||||||||||||| || | || | || |||||||| Sbjct 8141 GCCATACTGCGGTGG-TCTGCTATTTCGTCATCCGGGATCACTGTAACGTCAACCAGCGG 8083 Query 23695 AAATGC-CTGATGATAAACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGC 23753 || || || || || | || | |||| || || || ||| ||||| || | Sbjct 8082 GAAGGCAGTGCTG-TAGAGTCTGCCTGCCAGCTCCGGATCGTTAAACTCATCCAGCCACC 8024 Query 23754 GCGTGCTGTACGGATACGG-CGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACC 23812 | ||| ||| |||||||| | |||| |||| || ||||||| ||| ||||||| Sbjct 8023 GGGTGGAGTAGGGATACGGACTACGTTTCCCCGT-ATAGAACAGCACCGGTATGACCAGG 7965 Query 23813 GGTAGCTGATCGTTGCCCTG-TTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAG 23871 || | | | ||||||| || | || |||||||| ||||| |||||||| || | Sbjct 7964 GGCA-ATTTTTTATGCCCTGCCTCGATGTGGCGCTGCATGGCGGCCACCGCATAGCGCAC 7906 Query 23872 CAATCGAAACGCCATCAGCTTTTCCGGGCG-GCTCTGGTGCTCTATCAGACAGTAGACGT 23930 || ||||| ||||| || | | |||||| ||| ||||| || || || |||| Sbjct 7905 CAGACGAAAAGCCATATGCCTGT-CGGGCGAAGACTGATGCTCGATGAGCACGTGAACGT 7847 Query 23931 AACCATCATGGCCCGTCGTGGTCTTCATCGAGTAGAGCATATC---CGAGCACTGGCCCT 23987 | |||||| || | | ||| |||| ||| || | || || |||||| Sbjct 7846 ATCCATCA---CCTGCAGAGGTTTTCAGGCTGTAAAGGACGTCGCTGAAGTACTGGC--- 7793 Query 23988 TCAGGTCGTCTTCGATAAATGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCT 24047 || ||||| |||| || |||||||| | | | || |||| || ||||||| Sbjct 7792 GGAGATCGTCCTCGACGAACGAGCCGGATTCGAGCTTCAGCGTGCTGAGATCGCAGATGG 7733 Query 24048 TACGCAGGTGCGGCGGCAGATGGATTTCCAGAAAGTCCCGAGCGA 24092 ||||| | | |||||| |||||||||| ||| || || |||| Sbjct 7732 CGCGCAGCTCTGCCGGCAGGTGGATTTCCATAAAATCACGGGCGA 7688 >seq122 Length=4874392 Score = 87.8 bits (96), Expect = 6e-13 Identities = 247/368 (67%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 23607 GAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAG-GATTTCGTCA 23665 ||||||| ||||||| ||| ||| ||||| | ||||||| || | |||| | || Sbjct 4401066 GAATGTGTTTCTGCAGCAGGGTCAGTGCCGCCAAACTGCGATGG-TCTGCGATTACATCG 4401124 Query 23666 TCCGGTATTGCAGTGATATCGACCAGCGGAAA-TGCCTGATGATAAACCGTGGCCGCCAA 23724 || | ||| | |||| ||| ||||| ||||| || || || |||| | | ||||| | Sbjct 4401125 TCAGATATAACGGTGACATCAACCAGGGGAAAATGACTACTG-TAAAGCTTCGCCGCTAG 4401183 Query 23725 TTCTGGCTCAGCAAAA--CAGTCCAGACAGCGCGTGCTGTACGGATACGGCG-ACGTGGT 23781 | || | | ||||| || |||| |||| || || |||||||| | ||| Sbjct 4401184 CGCCGGATTA-CAAAATTCA-TCCAACCAGCAGGTTGAATAGGGATACGGGGTACGCTTC 4401241 Query 23782 GCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTGTTCTAGATG 23841 || | || ||||||| || || |||| || |||| | | |||| || ||||| Sbjct 4401242 CCCATA-TAGAACAGCACGGGTATTACCAATGGCAGCTTTTTATGGCCCGCATCAAGATG 4401300 Query 23842 CCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCTTTTCCGGGCG 23901 ||||||||| | || || |||||||| | ||| | || ||||| | || || ||| Sbjct 4401301 CCGCTGCATTGATGCTACTGCATACCGCAACAACCTGAATGCCATATGTTTATCTGGGGT 4401360 Query 23902 GCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTCGTGGTCTTCATCGA 23961 |||||| || || || || || |||||||||| | ||| ||||||| Sbjct 4401361 CGACTGGTGTTCAATGAGCACGTGGATATAACCATCATCTTCATCCGTAGTCTTCAGGCT 4401420 Query 23962 GTAGAGCA 23969 |||||||| Sbjct 4401421 GTAGAGCA 4401428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166784394800744