Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq122 347 3e-91 >seq122 Length=4874392 Score = 347 bits (384), Expect = 3e-91 Identities = 524/741 (71%), Gaps = 8/741 (1%) Strand=Plus/Minus Query 37703 AAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAAC 37762 ||| | ||||| || || ||||||||||||| | || || | ||| | || ||||| Sbjct 3442791 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 3442732 Query 37763 TTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTAT 37822 | || || || |||||||| || || || || || | ||| | ||||| |||||| || Sbjct 3442731 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 3442672 Query 37823 GAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTG 37882 || ||||| ||||| | || || || || ||| || ||| || |||| ||| ||| Sbjct 3442671 GAGCTGCTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTG 3442612 Query 37883 ACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAA 37942 |||| ||||| |||||||| || ||||| || || ||||| ||| |||| ||| || Sbjct 3442611 TCGATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAG 3442552 Query 37943 TGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC-GCATGGGTTGTCGA 38001 |||||| ||| || ||| || ||| ||||||||| | ||| || | ||||| Sbjct 3442551 TGGCGCAGCTGGGGGGCAGCGGATGGGCGCCAGATCGACCAGCTGAGCAAGG-TGGTCGA 3442493 Query 38002 AGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGA 38061 | || | ||| | | ||| | || ||||| | | || || ||||| || | || Sbjct 3442492 ACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGCGA 3442433 Query 38062 ATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGC---CTTTCAGTTCTATGTCGCCAA 38118 | |||| |||||| |||| | ||||| || ||| ||| |||||||| || || | Sbjct 3442432 ACTGGATGAGATGGCGCTGGCCCCGTGCCA---CGCGTTCTTCCAGTTCTACGTTGCGGA 3442376 Query 38119 CGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTT 38178 |||| | | || ||| | | ||||||||| |||| || | || ||||||| Sbjct 3442375 CGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTT 3442316 Query 38179 TAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGT 38238 || ||||| |||||||| || || ||||||| | ||||| || |||||| |||| || Sbjct 3442315 CAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGT 3442256 Query 38239 CGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGC 38298 ||||| | | | ||||| ||||| |||| |||||| || || ||||| || | Sbjct 3442255 GGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGAC 3442196 Query 38299 GAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCC 38358 | ||||||||||||||||| |||||| | ||||||||||| | | || || ||||| Sbjct 3442195 GCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCC 3442136 Query 38359 GCCGTCTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCC 38418 | ||||||||| |||||| | || ||||| || |||| || ||||| |||||||| Sbjct 3442135 GGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCC 3442076 Query 38419 GGCGATTAAAGCACCGGTGGC 38439 ||| |||||||| ||||| || Sbjct 3442075 GGCCATTAAAGCCCCGGTCGC 3442055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130630283894950