Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq109 226 9e-55 seq122 199 1e-46 >seq109 Length=705085 Score = 226 bits (250), Expect = 9e-55 Identities = 304/423 (72%), Gaps = 10/423 (2%) Strand=Plus/Minus Query 2495 ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACG 2554 ||||| | ||||| || || |||| |||||| | | |||||||| ||| |||| | Sbjct 585107 ACTACTTAGAAGAGCTGACCAAGCAATATCCAATCGTTTCAATCGAAGACGGTTTGGATG 585048 Query 2555 AAAACGACTGGGACGGTTGGAAATCTCTTACTGAACG-----TCTTGGTGGTAAAGTTCA 2609 | |||||||||||| | || ||||| ||| ||| || | ||| |||| Sbjct 585047 AGTCCGACTGGGACGGCT-----TCGCTTACCAAACCAAAGTTCTGGGCGACAAAATTCA 584993 Query 2610 ATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGA 2669 ||| || ||||| || | ||||| || || || |||| || |||| |||| | | Sbjct 584992 ATTAGTCGGTGATGATCTGTTCGTTACCAATACCAAAATCCTTAAAGAAGGGATTGAAAA 584933 Query 2670 ACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTT 2729 | |||||||||||||| |||||| | |||||||| ||| || |||| ||||| || Sbjct 584932 AGGTATCGCTAACTCAATCCTAATCAAATTCAACCAAATTGGTTCTCTGACCGAAACGTT 584873 Query 2730 TGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGG 2789 | || ||| ||||||||||||| || |||||||| ||||| | || ||||||||||| Sbjct 584872 AGCGGCAATCAAAATGGCGAAAGATGCAGGATACACGGCAGTCATCTCTCACCGTTCAGG 584813 Query 2790 TGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAA 2849 || ||||||||| |||| ||||| || | ||||| | || || || ||||| || Sbjct 584812 CGAGACTGAAGATGCAACCATCGCAGACTTAGCAGTGGGTACCGCAGCAGGCCAAATCAA 584753 Query 2850 GACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 || ||||| || ||| |||||||| ||||||| |||||||| || | ||||| || Sbjct 584752 AACCGGTTCTATGAGCCGTTCTGACCGTGTTGCTAAGTACAACCAGCTGATCCGTATTGA 584693 Query 2910 AGA 2912 ||| Sbjct 584692 AGA 584690 >seq122 Length=4874392 Score = 199 bits (220), Expect = 1e-46 Identities = 299/423 (71%), Gaps = 10/423 (2%) Strand=Plus/Minus Query 2495 ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACG 2554 ||| ||| ||||| || ||| | ||||||||| || |||||||||| ||| |||| | Sbjct 3400074 ACTTCCTGGAAGACCTGACTAAGCAGTACCCAATCGTCTCTATCGAAGACGGTCTGGATG 3400015 Query 2555 AAAACGACTGGGACGGTTGGAAATCTCTTACTGAAC----GT-CTTGGTGGTAAAGTTCA 2609 || ||||||| |||| || ||||| || || || || | ||| | || Sbjct 3400014 AATCTGACTGGGCTGGTT-----TCGCTTACCAGACCAAAGTGCTGGGCGACAAAATCCA 3399960 Query 2610 ATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGA 2669 |||| |||||||| | ||||| || ||||| ||| || ||||||| | | Sbjct 3399959 GCTGGTGGGTGACGATCTGTTCGTTACCAACACCAAGATCCTGAAAGAAGGTATCGACAA 3399900 Query 2670 ACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTT 2729 | |||||||| ||||| |||||| | ||||| |||||| | |||| ||||| | Sbjct 3399899 AGGTATCGCTAACTCCATCCTGATCAAATTCAACCAGATCGGTTCACTGACCGAAACCCT 3399840 Query 2730 TGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGG 2789 | || ||| ||||||| ||||| || || ||||| || || | || ||||||||||| Sbjct 3399839 GGCTGCGATCAAAATGGCAAAAGACGCCGGTTACACTGCGGTGATCTCTCACCGTTCAGG 3399780 Query 2790 TGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAA 2849 ||||||||||||| | || |||||||| | || || | || || || || || || Sbjct 3399779 TGAAACTGAAGATGCCACCATCGCTGACCTGGCGGTGGGTACAGCTGCAGGCCAGATCAA 3399720 Query 2850 GACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 || |||||| || ||| |||||||| | ||||| |||||||| || | |||||||| Sbjct 3399719 AACCGGTTCAATGAGCCGTTCTGACCGTGTCGCTAAGTACAACCAGCTGATCCGTATCGA 3399660 Query 2910 AGA 2912 ||| Sbjct 3399659 AGA 3399657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156026794936572