Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq122 201 2e-46 seq437 87.8 3e-12 seq83 87.8 3e-12 >seq122 Length=4874392 Score = 201 bits (222), Expect = 2e-46 Identities = 211/274 (77%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 196091 CAGCAGGTGCTC-AGTATCGGCCACGAC-AAAGCTGACCGTACCGGCACAGGCACTACGT 196148 ||||| |||||| || | || |||| | ||| |||||| ||||| || ||||| || Sbjct 3442818 CAGCACGTGCTCGAGCA--GGGCACGCCCAAAAATGACCGCACCGGAACCGGCACGCTGT 3442761 Query 196149 CCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGA 196208 | | | || |||||||| ||| ||||||| ||||| || |||||||||||||| | Sbjct 3442760 CGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGACGGTTTTCCGCTGGTCACCACCA 3442701 Query 196209 AGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCA 196268 |||| |||| |||| || ||||||||||| |||||||||||||| ||||| ||||||| Sbjct 3442700 AGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCTGTGGTTCCTTAACGGTGACACCA 3442641 Query 196269 ACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCG 196328 ||||| |||||||| || || || || |||||| |||||||||| | ||| | Sbjct 3442640 ACATCGCCTACCTGAAGGAAAATAAGGTGTCGATCTGGGACGAGTGGGCCGATGAAAAGG 3442581 Query 196329 GTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 || |||| ||||||||||| || || |||||||| Sbjct 3442580 GTGACCTCGGGCCGGTTTATGGCAAACAGTGGCG 3442547 Score = 156 bits (172), Expect = 7e-33 Identities = 225/315 (71%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGC 196839 || || || ||||||||||| | |||| |||| |||||||| | |||||||| ||||| Sbjct 3442365 TCCTGCCAACTGTATCAGCGCTCCTGCG-ATATCTTCCTCGGCCTGCCGTTCAATATCGC 3442307 Query 196840 GTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTT 196899 ||||| |||||| | || ||| |||| || ||| || ||| | ||| || || Sbjct 3442306 CAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGATTT 3442247 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 || ||||| || || || ||| | ||| ||| ||| |||| ||| || Sbjct 3442246 TGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTGCA 3442187 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTAT 197019 |||| | || ||||| || |||||| |||| ||||||| ||||| ||||| ||| Sbjct 3442186 GCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTCTAT 3442127 Query 197020 CTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAA 197079 |||||| || || || |||||||| | | ||| ||||| ||||||||||| ||||| Sbjct 3442126 CTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCCGGCCATTAA 3442067 Query 197080 AGCCCCGGTGGCTAT 197094 ||||||||| || || Sbjct 3442066 AGCCCCGGTCGCCAT 3442052 Score = 89.7 bits (98), Expect = 8e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 574977 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 575036 Query 3857 CAGTCCTGCCATAC 3870 | || | |||| || Sbjct 575037 CCGTTCCGCCAAAC 575050 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 568664 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 568723 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 568724 CCGTTCCGCCA 568734 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 1434231 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1434172 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 1434171 CAGAGGAGCCATATTT 1434156 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 2544460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2544519 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 2544520 CAGAGGAGCCATATTT 2544535 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 2590692 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2590751 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 2590752 CAGAGGAGCCATATTT 2590767 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 4587284 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 4587343 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 4587344 CCGTTCCGCCA 4587354 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 2497401 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2497460 Query 4266 CAGGGTCGCCACATT 4280 ||| | |||| ||| Sbjct 2497461 CAGAGGAGCCAAATT 2497475 >seq437 Length=145597 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 71250 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 71309 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 71310 CCGTTCCGCCA 71320 >seq83 Length=912621 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 400915 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 400974 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 400975 CAGAGGAGCCATATTT 400990 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 426535 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 426594 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 426595 CAGAGGAGCCAAATTT 426610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771481997874360