Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq620 145 4e-30 seq122 109 3e-19 >seq620 Length=44282 Score = 145 bits (160), Expect = 4e-30 Identities = 218/308 (71%), Gaps = 10/308 (3%) Strand=Plus/Plus Query 68629 GGTGCTGC--ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 68686 |||| ||| ||||||||||| | ||||| || || ||||||| |||||| || || Sbjct 6808 GGTGGTGCCTATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCC 6867 Query 68687 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 68746 | || ||| ||||||| | |||||||| ||||||||||| || | || || ||||| Sbjct 6868 GCTTCGGAAATTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTG 6927 Query 68747 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 68806 ||| ||| | | || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 6928 GCCGAGCCTTCGTAACATCGCCGATCAGTGTGAGATAAGTCGCCGTTCGGTGATAAATCA 6987 Query 68807 TATTGCGGCCCTTTGTGAGTCCGGGCTGGTaaaaaaaG----TCACCCGGAAAGGTGAAA 68862 || | || |||||||| | || || | | ||||| || ||| || | | Sbjct 6988 CATCGATGCTCTTTGTGAATTTGGCCTCCTGAGAAAAGAGCATCGCCC----TGGCGTCA 7043 Query 68863 AAGGTAACTCAAGTAATATCTATCTCCTTCATCTGGATGGTGCAGGAGATTCACTAGGGG 68922 |||| || ||||| ||| |||| ||| | | ||||||||||||||| ||| ||||| Sbjct 7044 AAGGGAATTCAAGCAATCTCTACTACCTGACTTTAGATGGTGCAGGAGATGCACCAGGGG 7103 Query 68923 GGAGTGCA 68930 | |||||| Sbjct 7104 GTAGTGCA 7111 >seq122 Length=4874392 Score = 109 bits (120), Expect = 3e-19 Identities = 104/130 (80%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 34503 AAACCTCGCTTCGGCGGGGTTTTTTGCTTTTCTGGAGGTCAATAATGCAGGGCGAAAAGC 34562 |||||||||| |||||||||||||||| ||||||||| || | |||| ||||||||| Sbjct 2973355 AAACCTCGCTCCGGCGGGGTTTTTTGC-TTTCTGGAGTGCAGTTATGCCTAGCGAAAAGC 2973297 Query 34563 AGCAGCCATAtttttttAACCCTGGTATGA--CTGTTGAACAGCTTGAAGACTGGCTGGA 34620 | ||||| ||||| | ||| || || |||| | |||| |||||||| || ||||| | Sbjct 2973296 AACAGCCCTATTTCTATAATCCCGGCATGAACCCGTTG--CAGCTTGAGGAATGGCTAAA 2973239 Query 34621 GCAGCAAAAG 34630 ||||||||| Sbjct 2973238 TCAGCAAAAG 2973229 Score = 102 bits (112), Expect = 4e-17 Identities = 101/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 73966 AAACCTCGCTTCGGCGGGGTTTTTGCTTTTCTGGAGGTCAATAATGCAGGGCGAAAAGCA 74025 |||||||||| ||||||||||||| ||||||||| || | |||| |||||||||| Sbjct 2973355 AAACCTCGCTCCGGCGGGGTTTTTTGCTTTCTGGAGTGCAGTTATGCCTAGCGAAAAGCA 2973296 Query 74026 GCAGCCATAtttttttAACCCTGGTATGA--CTGTTGAACAGCTTGAAGACTGGCTGGAG 74083 ||||| ||||| | ||| || || |||| | |||| |||||||| || ||||| | Sbjct 2973295 ACAGCCCTATTTCTATAATCCCGGCATGAACCCGTTG--CAGCTTGAGGAATGGCTAAAT 2973238 Query 74084 CAGCAAAAG 74092 ||||||||| Sbjct 2973237 CAGCAAAAG 2973229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247456310140648