Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2159 161 1e-37 seq2137 161 1e-37 seq1843 161 1e-37 seq1098 161 1e-37 >seq2159 Length=947710 Score = 161 bits (178), Expect = 1e-37 Identities = 170/218 (78%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||| | Sbjct 946033 GTACAAAGGGCAGGGACGTAATCAGTACTAGCT-GATGACTAGCACTTACTGGGAATT-C 946090 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||||||||||| |||||||||| | || || ||||||||||| Sbjct 946091 CTCGTTCAAGGGGCACAATTGCAATCCCCTATCCCCATTAAGAAAAACATTCAAAGATTA 946150 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| | |||| | || |||| || | ||| ||||||||||||||| Sbjct 946151 --CTAACC--TTATTAAAGGCTAGAGAACTCATTTTGTCTCTCAATGTAGCGCGCGTGCG 946206 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||||| Sbjct 946207 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC 946244 >seq2137 Length=1626465 Score = 161 bits (178), Expect = 1e-37 Identities = 170/218 (78%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||| | Sbjct 273 GTACAAAGGGCAGGGACGTAATCAGTACTAGCT-GATGACTAGCACTTACTGGGAATT-C 330 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||||||||||| |||||||||| | || || ||||||||||| Sbjct 331 CTCGTTCAAGGGGCACAATTGCAATCCCCTATCCCCATTAAGAAAAACATTCAAAGATTA 390 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| | |||| | || |||| || | ||| ||||||||||||||| Sbjct 391 --CTAACC--TTATTAAAGGCTAGAGAACTCATTTTGTCTCTCAATGTAGCGCGCGTGCG 446 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||||| Sbjct 447 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC 484 >seq1843 Length=49071 Score = 161 bits (178), Expect = 1e-37 Identities = 170/218 (78%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||| | Sbjct 4881 GTACAAAGGGCAGGGACGTAATCAGTACTAGCT-GATGACTAGCACTTACTGGGAATT-C 4824 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||||||||||| || ||||||| | || || ||||||||||| Sbjct 4823 CTCGTTCAAGGGGCACAATTGCAATCCCCTGTCCCCATTAAGAAAAACATTCAAAGATTA 4764 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | || | | | |||| | ||| ||| || || ||| |||||||||||||| Sbjct 4763 CTA--ACTTTTT--CAAAGGCTAGAGAACTCATTTTATTTCTCAATGTAGCGCGCGTGCA 4708 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||||| Sbjct 4707 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC 4670 >seq1098 Length=35631 Score = 161 bits (178), Expect = 1e-37 Identities = 170/218 (78%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||| | Sbjct 1476 GTACAAAGGGCAGGGACGTAATCAGTACTAGCT-GATGACTAGCACTTACTGGGAATT-C 1419 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||||||||||| |||||||||| | || || ||||||||||| Sbjct 1418 CTCGTTCAAGGGGCACAATTGCAATCCCCTATCCCCATTAAGAAAAACATTCAAAGATTA 1359 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| | |||| | || |||| || | ||| ||||||||||||||| Sbjct 1358 --CTAACC--TTATTAAAGGCTAGAGAACTCATTTTGTCTCTCAATGTAGCGCGCGTGCG 1303 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||||| Sbjct 1302 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751983892865