Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2137 129 1e-27 seq1843 129 1e-27 seq1098 129 1e-27 seq2159 125 1e-26 >seq2137 Length=1626465 Score = 129 bits (142), Expect = 1e-27 Identities = 178/243 (73%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAAT 135 ||||||| ||||||||||| | |||||| | | || || | ||| | ||||||||| Sbjct 1145 ACTTTGATTAAATTAGAGTGCTTAAAGCAAGTGTGTTACTTGGATATAAATGCATGGAAT 1086 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 || ||||| | || ||||||||| |||||||| | || || ||||||| | | Sbjct 1085 GATGGAATATGTTGTT--GTTCTATTT-GTTGGTTTTT--GAACGATAAAATGATTGAAA 1031 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 || | || ||||| | ||||| || ||||||||||||||| || ||| Sbjct 1030 GGAACTGTTGGGGGCATTCGTATTGTTGTGAGAGAGGTGAAATTCTTAGACCACAGCAAG 971 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| Sbjct 970 ACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTTAG 912 Query 316 GGG 318 || Sbjct 911 AGG 909 >seq1843 Length=49071 Score = 129 bits (142), Expect = 1e-27 Identities = 178/243 (73%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAAT 135 ||||||| ||||||||||| | || ||| | | || || | ||| | | ||||||||| Sbjct 3952 ACTTTGATGAAATTAGAGTGCTTAAGGCAAGTGTGTTACTTGGATATAATTGCATGGAAT 4011 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 || ||||| | ||| ||||||||| |||||||| | || || |||| || ||| Sbjct 4012 GATGGAATATGT--TGCTGTTCTATTT-GTTGGTTTTT--GAACGGTACAATGGTTGATA 4066 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 || | || ||||| | ||||| | ||||||||||||||| || ||| Sbjct 4067 GGAACTGTTGGGGGCATTCGTATTGTTGCGAGAGAGGTGAAATTCTTAGACCACAGCAAG 4126 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| Sbjct 4127 ACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTTAG 4185 Query 316 GGG 318 || Sbjct 4186 AGG 4188 >seq1098 Length=35631 Score = 129 bits (142), Expect = 1e-27 Identities = 178/243 (73%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAAT 135 ||||||| ||||||||||| | |||||| | | || || | ||| | ||||||||| Sbjct 603 ACTTTGATTAAATTAGAGTGCTTAAAGCAAGTGTGTTACTTGGATATAAATGCATGGAAT 662 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 || ||||| | || ||||||||| |||||||| | || || ||||||| | | Sbjct 663 GATGGAATATGTTGTT--GTTCTATTT-GTTGGTTTTT--GAACGATAAAATGATTGAAA 717 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 || | || ||||| | ||||| || ||||||||||||||| || ||| Sbjct 718 GGAACTGTTGGGGGCATTCGTATTGTTGTGAGAGAGGTGAAATTCTTAGACCACAGCAAG 777 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| Sbjct 778 ACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTTAG 836 Query 316 GGG 318 || Sbjct 837 AGG 839 >seq2159 Length=947710 Score = 125 bits (138), Expect = 1e-26 Identities = 177/243 (73%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAAT 135 ||||||| ||||||||||| | |||||| | | || || | ||| | ||||||||| Sbjct 946906 ACTTTGATTAAATTAGAGTGCTTAAAGCAAGTGTGTTACTTGGATATAAATGCATGGAAT 946847 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 || ||||| | || ||||||||| |||||||| | || || ||||||| | | Sbjct 946846 GATGGAATATGTTGTT--GTTCTATTT-GTTGGTTTTT--GAACGATAAAATGATTGAAA 946792 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 || | || ||||| | ||||| || ||||||||||||||| || ||| Sbjct 946791 GGAACTGTTGGGGGCATTCGTATTGTTGTGAGAGAGGTGAAATTCTTAGACCACAGCAAG 946732 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || |||||||| |||||| || ||||| ||||||||||| |||| ||||||||||||| Sbjct 946731 ACGAACTACTGTGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTTAG 946673 Query 316 GGG 318 || Sbjct 946672 AGG 946670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915179764928