Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2159 214 3e-53 seq1098 214 3e-53 seq2137 210 3e-52 seq1843 181 2e-43 >seq2159 Length=947710 Score = 214 bits (236), Expect = 3e-53 Identities = 198/245 (81%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 946188 TCAATGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC-TC 946246 Query 76 AAACTTCCATTGGCTGGAAGCCAATAG-TCCCTCTAAGAAGCCAGCCACCA-ACCATAGT 133 || || | | || | | | |||| |||||| | || | || | | | Sbjct 946247 TG--TTTCAAAGCGTTAAACACGCTTGATCCCATTAAGAAACACCACAGAAGACGAGATT 946304 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | || | |||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 946305 CTGTGTGT-TATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 946363 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 946364 CTCCACCAACTAAGAACGGCCATGCACCACCATCCACCAAATCAAGAAAGAGCTATCAAT 946423 Query 254 CTGTC 258 ||||| Sbjct 946424 CTGTC 946428 >seq1098 Length=35631 Score = 214 bits (236), Expect = 3e-53 Identities = 198/245 (81%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1321 TCAATGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1263 Query 76 AAACTTCCATTGGCTGGAAGCCAATAG-TCCCTCTAAGAAGCCAGCCACCA-ACCATAGT 133 || || | | || | | | |||| |||||| | || | || | | | Sbjct 1262 TG--TTTCAAAGCGTTAAACACGCTTGATCCCATTAAGAAACACCACAGAAGACGAGATT 1205 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | || | |||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 1204 CTGTGTGT-TATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 1146 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1145 CTCCACCAACTAAGAACGGCCATGCACCACCATCCACCAAATCAAGAAAGAGCTATCAAT 1086 Query 254 CTGTC 258 ||||| Sbjct 1085 CTGTC 1081 >seq2137 Length=1626465 Score = 210 bits (232), Expect = 3e-52 Identities = 198/245 (81%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 428 TCAATGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC-TC 486 Query 76 AAACTTCCATTGGCTGGAAGCCAATAG-TCCCTCTAAGAAGCCAGCCACCA-ACCATAGT 133 || || | | || | | | |||| |||||| | || | || | | | Sbjct 487 TG--TTTCAAAGCGTTAAACACGCTTGATCCCATTAAGAAACACCACAGAAGACGAGATT 544 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | || | |||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 545 CTGTGTGT-TATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 603 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 604 CTCCACCAACTAAGAACGGCCATGCACCACCATCCA-CCAATCAAGAAAGAGCTATCAAT 662 Query 254 CTGTC 258 ||||| Sbjct 663 CTGTC 667 >seq1843 Length=49071 Score = 181 bits (200), Expect = 2e-43 Identities = 194/251 (77%), Gaps = 18/251 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC-- 73 ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 4726 TCAATGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGCTCT 4667 Query 74 ---TCAAAC--TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA-AC 127 ||||| || || ||| | ||| | | ||| | ||| || | || Sbjct 4666 GTTTCAAAGCGTTACACACGCTTAATCCCATTTGG-----TAACA--CCA--CAGAAGAC 4616 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | || || | || ||| ||| || |||||||||||||||||||||||||||| Sbjct 4615 GAGATTCCATACGT-TAATTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGAT 4557 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 | |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| Sbjct 4556 AGATCACTCCACCAACTAAGAACGGCCATGCACCACCATCCACCAAATTAAGAAAGAGCT 4497 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 4496 ATCAATCTGTC 4486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796782933291