Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2159 165 2e-38 seq2137 165 2e-38 seq1098 165 2e-38 seq1843 152 1e-34 >seq2159 Length=947710 Score = 165 bits (182), Expect = 2e-38 Identities = 169/216 (78%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || Sbjct 946244 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACATTGAGAG 946185 Query 174 AGCCAACGAGTTC-ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 | || |||||| | |||| |||| | |||||||| | || | | || | Sbjct 946184 ACAAAATGAGTTCTCTAGCCTT--TAATAAGG--TTAGTAATCTT-TGAATGTTTTTCTT 946130 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||||| | ||||||||| | | ||| |||||||||| || |||||| || || Sbjct 946129 AATGGGGATAGGGGATTGCAATTGTGCCCCTTGAACGAGGAATTCCCAGTAAGTGCTAGT 946070 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | ||||||||||||||||||||||| Sbjct 946069 CATCAGCTAGTACTGATTACGTCCCTGCCCTTTGTA 946034 >seq2137 Length=1626465 Score = 165 bits (182), Expect = 2e-38 Identities = 169/216 (78%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || Sbjct 484 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACATTGAGAG 425 Query 174 AGCCAACGAGTTC-ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 | || |||||| | |||| |||| | |||||||| | || | | || | Sbjct 424 ACAAAATGAGTTCTCTAGCCTT--TAATAAGG--TTAGTAATCTT-TGAATGTTTTTCTT 370 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||||| | ||||||||| | | ||| |||||||||| || |||||| || || Sbjct 369 AATGGGGATAGGGGATTGCAATTGTGCCCCTTGAACGAGGAATTCCCAGTAAGTGCTAGT 310 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | ||||||||||||||||||||||| Sbjct 309 CATCAGCTAGTACTGATTACGTCCCTGCCCTTTGTA 274 >seq1098 Length=35631 Score = 165 bits (182), Expect = 2e-38 Identities = 169/216 (78%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || Sbjct 1265 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACATTGAGAG 1324 Query 174 AGCCAACGAGTTC-ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 | || |||||| | |||| |||| | |||||||| | || | | || | Sbjct 1325 ACAAAATGAGTTCTCTAGCCTT--TAATAAGG--TTAGTAATCTT-TGAATGTTTTTCTT 1379 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||||| | ||||||||| | | ||| |||||||||| || |||||| || || Sbjct 1380 AATGGGGATAGGGGATTGCAATTGTGCCCCTTGAACGAGGAATTCCCAGTAAGTGCTAGT 1439 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | ||||||||||||||||||||||| Sbjct 1440 CATCAGCTAGTACTGATTACGTCCCTGCCCTTTGTA 1475 >seq1843 Length=49071 Score = 152 bits (168), Expect = 1e-34 Identities = 165/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | Sbjct 4670 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCTGCACGCGCGCTACATTGAGAA 4729 Query 174 AGCCAACGAGTTC-ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 | || |||||| | |||| ||| | |||||||| | || | | || | Sbjct 4730 ATAAAATGAGTTCTCTAGCCTT----TGAAAAAGTTAGTAATCTT-TGAATGTTTTTCTT 4784 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||||| || | ||||||||| | | ||| |||||||||| || |||||| || || Sbjct 4785 AATGGGGACAGGGGATTGCAATTGTGCCCCTTGAACGAGGAATTCCCAGTAAGTGCTAGT 4844 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | ||||||||||||||||||||||| Sbjct 4845 CATCAGCTAGTACTGATTACGTCCCTGCCCTTTGTA 4880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947179057408