Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1688 376 8e-102 >seq1688 Length=4358 Score = 376 bits (416), Expect = 8e-102 Identities = 372/478 (78%), Gaps = 5/478 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||| ||||| | |||||||||||| ||||||||| ||| Sbjct 2565 CGAGTCTGAATAGGGCGAATGAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCA 2506 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 2505 TGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAAA 2446 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||||||||| |||||||||||||| || |||||| ||| |||||||||||| Sbjct 2445 GTCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAGATAGCTGGTTCT 2386 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 | ||||| ||||| |||||| | || |||| ||| ||||||||||||||||| | Sbjct 2385 CCGCGAAATCTATTGAGGTAGATCGTCGTGTATTACCCTCGGGGGTAGAGCACTGGATGG 2326 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||| | | ||||||||||| |||||||||||| | | ||| | | Sbjct 2325 GCTAGGGGGGCCCAAAGCCTTACCAAACCTAACCAAACTCCGAATACCGAGGAGTATGAG 2266 Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 | ||| || || |||||||||||||||| | ||||||| || | || ||| | Sbjct 2265 CACGGCAGACAGACGATGGGTGCTAAGGTCCATTGTCGAGAGGGAAACAGCCCAGACCAC 2206 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| |||| ||||||| | || || || | | | || ||| | Sbjct 2205 CAGCTAAGGCCCCTAAATCGTGGCTAAGTGGGA--AAGGATGTGGGGATTCCAAAACAAC 2148 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||| |||||||| |||||||||| || |||||||| |||||| |||||||| ||| Sbjct 2147 CAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689562642944