Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2159 93.3 7e-17 seq2114 93.3 7e-17 seq2084 93.3 7e-17 seq1817 93.3 7e-17 seq1713 93.3 7e-17 seq1227 93.3 7e-17 seq1098 93.3 7e-17 seq1049 93.3 7e-17 seq988 93.3 7e-17 seq965 93.3 7e-17 seq931 93.3 7e-17 seq1808 87.8 3e-15 seq1208 87.8 3e-15 seq1002 87.8 3e-15 seq80 87.8 3e-15 >seq2159 Length=947710 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 942131 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 942075 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 942074 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 942015 Query 121 GA 122 || Sbjct 942014 GA 942013 >seq2114 Length=2167734 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 2166396 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 2166340 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 2166339 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 2166280 Query 121 GA 122 || Sbjct 2166279 GA 2166278 >seq2084 Length=569963 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 568625 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 568569 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 568568 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 568509 Query 121 GA 122 || Sbjct 568508 GA 568507 >seq1817 Length=913008 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 2896 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 2952 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 2953 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 3012 Query 121 GA 122 || Sbjct 3013 GA 3014 >seq1713 Length=249769 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 3110 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 3166 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 3167 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 3226 Query 121 GA 122 || Sbjct 3227 GA 3228 >seq1227 Length=915448 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 5335 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 5391 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 5392 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 5451 Query 121 GA 122 || Sbjct 5452 GA 5453 >seq1098 Length=35631 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 5375 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 5431 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 5432 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 5491 Query 121 GA 122 || Sbjct 5492 GA 5493 >seq1049 Length=3410 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 1335 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 1391 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1392 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 1451 Query 121 GA 122 || Sbjct 1452 GA 1453 >seq988 Length=5645 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 1655 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 1711 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1712 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 1771 Query 121 GA 122 || Sbjct 1772 GA 1773 >seq965 Length=34807 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 1338 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 1394 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1395 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 1454 Query 121 GA 122 || Sbjct 1455 GA 1456 >seq931 Length=2814 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/122 (79%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 1477 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 1421 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1420 GGCACTAAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 1361 Query 121 GA 122 || Sbjct 1360 GA 1359 >seq1808 Length=441957 Score = 87.8 bits (96), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 83418 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 83474 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | || ||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 83475 GGCACTAAACTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 83534 Query 121 GA 122 || Sbjct 83535 GA 83536 >seq1208 Length=22079 Score = 87.8 bits (96), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 20424 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 20368 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | ||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 20367 GGCACTTAGCTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 20308 Query 121 GA 122 || Sbjct 20307 GA 20306 >seq1002 Length=13031 Score = 87.8 bits (96), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 761 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 817 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | || ||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 818 GGCACTAAACTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 877 Query 121 GA 122 || Sbjct 878 GA 879 >seq80 Length=50740 Score = 87.8 bits (96), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 1881 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 1937 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | || ||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1938 GGCACTAAACTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 1997 Query 121 GA 122 || Sbjct 1998 GA 1999 Score = 87.8 bits (96), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 48857 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 48801 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | || ||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 48800 GGCACTAAACTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 48741 Query 121 GA 122 || Sbjct 48740 GA 48739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819182453504