Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2159 410 4e-112 seq1843 405 2e-110 seq2137 396 8e-108 seq1098 295 2e-77 seq1006 156 1e-35 >seq2159 Length=947710 Score = 410 bits (454), Expect = 4e-112 Identities = 411/516 (80%), Gaps = 22/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| ||| | || ||| || | || |||||| ||||||||||| Sbjct 947140 GTACTCATTCCAATTACGAAGCCTCATTTGAGTCCCGCATT-GTATTTTTTGTCACTACC 947198 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 947199 TCCCCGTGCCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 947258 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 947259 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 947318 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGG 238 | | || ||||||||| ||||||||| ||||| | |||||| ||| | | |||| Sbjct 947319 AAACATATAATATACCATCGACAGTTGATAGAGCAGATACTTTGAAGGAA-TAGCACCGG 947377 Query 239 CTCAAGGCC---ATGCGATTCGTTAAGTTATTATGAATCACCA--AGGAG-CCCCGA-AG 291 | | ||||| |||| | | |||||||| || || ||| | || |||||| || Sbjct 947378 CCCGAGGCCGCAATGC--TCGGCAAAGTTATTCAGAGTCGCCACCTGCAGCCCCCGAGAG 947435 Query 292 GGCGTTGGTTTTTTATCTAATAAATACAC-CCCTTCCGAAGTCGGGGTTTTTAGCATGTA 350 ||| | | ||| |||||||| ||| || ||||||| | | || ||||||| Sbjct 947436 GGCATGG---TTTGCACTAATAAAAGCACATCCAACCGAAGTTGAACGTATTTGCATGTA 947492 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT-AAACGATAAC 409 ||||||||||||||||||| |||||||| || || || ||| || ||| ||||| Sbjct 947493 TTAGCTCTAGAATTACCACAGTTATCCAATTAACAAAACAC-ATCCCATGAAATTATAAC 947551 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATACTTAGACATGCATG 468 |||||||||||||||||||| ||||||| || | | | | ||||| ||||||||| Sbjct 947552 TGATTTAATGAGCCATTCGCGGTTTCAC--CATTCTTGGGTCTGAACTTATACATGCATG 947609 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| |||||||||||||| ||||||||| Sbjct 947610 GCTTAATCTTTAAGACAAGCATATGATTACTGGCAG 947645 >seq1843 Length=49071 Score = 405 bits (448), Expect = 2e-110 Identities = 409/516 (79%), Gaps = 21/516 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| ||| | || ||| || | || ||||| ||||||||||| Sbjct 3689 GTACTCATTCCAATTACGAAGCCTCATTTGAGTCCCGCATTGTTATTTTTTGTCACTACC 3630 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3629 TCCCCGTGCCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 3570 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3569 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 3510 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGG 238 | | || ||||||||| ||||||||| ||||| | |||||| ||| | | |||| Sbjct 3509 AAACATATAATATACCATCGACAGTTGATAGAGCAGATACTTTGAAGGAA-TAGCACCGG 3451 Query 239 CTCAAGGCC---ATGCGATTCGTTAAGTTATTATGAATCACCA--AGGAGCCC-CGA-AG 291 | ||||| |||| | | |||||||| || || ||| | ||||| ||| || Sbjct 3450 CCTGAGGCCGTAATGC--TCGGCAAAGTTATTCAGAGTCGCCACCTGCAGCCCTCGAGAG 3393 Query 292 GGCGTTGGTTTTTTATCTAATAAATACAC-CCCTTCCGAAGTCGGGGTTTTTAGCATGTA 350 ||| | | ||| |||||||| ||| || ||||||| | | || ||||||| Sbjct 3392 GGCATGG---TTTGCACTAATAAAAGCACATCCAACCGAAGTTGAACGTATTTGCATGTA 3336 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT-AAACGATAAC 409 ||||||||||||||||||| |||||||| || || || ||| || ||| ||||| Sbjct 3335 TTAGCTCTAGAATTACCACAGTTATCCAATTAACAAAACAC-ATCCCATGAAATTATAAC 3277 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATACTTAGACATGCATG 468 |||||||||||||||||||| ||||||| || | | | | ||||| ||||||||| Sbjct 3276 TGATTTAATGAGCCATTCGCGGTTTCAC--CATTCTTGGGTCTGAACTTATACATGCATG 3219 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| |||||||||||||| ||||||||| Sbjct 3218 GCTTAATCTTTAAGACAAGCATATGATTACTGGCAG 3183 >seq2137 Length=1626465 Score = 396 bits (438), Expect = 8e-108 Identities = 408/516 (79%), Gaps = 22/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| ||| | || ||| || | || ||||| ||||||||||| Sbjct 1379 GTACTCATTCCAATTACGAAGCCTCATTTGAGTCCCGCATTGTTATTTTTTGTCACTACC 1438 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1439 TCCCCGTGCCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 1498 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1499 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA-TCCCCGTTACCCGTTACAACCATGGT 1557 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGG 238 | | || ||||||||| ||||||||| ||||| | |||||| ||| | | |||| Sbjct 1558 AAACATATAATATACCATCGACAGTTGATAGAGCAGATACTTTGAAGGAA-TAGCACCGG 1616 Query 239 CTCAAGGCC---ATGCGATTCGTTAAGTTATTATGAATCACCA--AGGAG-CCCCGA-AG 291 | ||||| |||| | | |||||||| || || ||| | || |||||| || Sbjct 1617 CCTGAGGCCGTAATGC--TCGGCAAAGTTATTCAGAGTCGCCACCTGCAGCCCCCGAGAG 1674 Query 292 GGCGTTGGTTTTTTATCTAATAAATACAC-CCCTTCCGAAGTCGGGGTTTTTAGCATGTA 350 ||| | | ||| |||||||| ||| || ||||||| | | || ||||||| Sbjct 1675 GGCATGG---TTTGCACTAATAAAAGCACATCCAACCGAAGTTGAACGTATTTGCATGTA 1731 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT-AAACGATAAC 409 ||||||||||||||||||| |||||||| || || || ||| || ||| ||||| Sbjct 1732 TTAGCTCTAGAATTACCACAGTTATCCAATTAACAAAACAC-ATCCCATGAAATTATAAC 1790 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATACTTAGACATGCATG 468 |||||||||||||||||||| ||||||| || | | | | ||||| ||||||||| Sbjct 1791 TGATTTAATGAGCCATTCGCGGTTTCAC--CATTCTTGGGTCTGAACTTATACATGCATG 1848 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| |||||||||||||| ||||||||| Sbjct 1849 GCTTAATCTTTAAGACAAGCATATGATTACTGGCAG 1884 >seq1098 Length=35631 Score = 295 bits (326), Expect = 2e-77 Identities = 297/375 (79%), Gaps = 16/375 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| ||| | || ||| || | || ||||| ||||||||||| Sbjct 369 GTACTCATTCCAATTACGAAGCCTCATTTGAGTCCCGCATTGTTATTTTTTGTCACTACC 310 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 309 TCCCCGTGCCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 250 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 249 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 190 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGG 238 | | || ||||||||| ||||||||| ||||| | |||||| ||| | | |||| Sbjct 189 AAACATATAATATACCATCGACAGTTGATAGAGCAGATACTTTGAAGGAA-TAGCACCGG 131 Query 239 CTCAAGGCC---ATGCGATTCGTTAAGTTATTATGAATCACCA--AGGAG-CCCCGA-AG 291 | ||||| |||| | | |||||||| || || ||| | || |||||| || Sbjct 130 CCTGAGGCCGTAATGC--TCGGCAAAGTTATTCAGAGTCGCCACCTGCAGCCCCCGAGAG 73 Query 292 GGCGTTGGTTTTTTATCTAATAAATACAC-CCCTTCCGAAGTCGGGGTTTTTAGCATGTA 350 ||| | | ||| |||||||| ||| || ||||||| | | || ||||||| Sbjct 72 GGCATGG---TTTGCACTAATAAAAGCACATCCAACCGAAGTTGAACGTATTTGCATGTA 16 Query 351 TTAGCTCTAGAATTA 365 ||||||||||||||| Sbjct 15 TTAGCTCTAGAATTA 1 >seq1006 Length=5121 Score = 156 bits (172), Expect = 1e-35 Identities = 230/309 (74%), Gaps = 20/309 (6%) Strand=Plus/Plus Query 207 ATAGGGCAGAAA-TTTGAATGAACCATCGCCGGCTCAAGGCC---ATGCGATTCGTTAAG 262 |||| ||||| | |||||| ||| | | ||||| ||||| |||| | | ||| Sbjct 1 ATAGAGCAGATACTTTGAAGGAAT-AGCACCGGCCTGAGGCCGTAATGC--TCGGCAAAG 57 Query 263 TTATTATGAATCACCAA--GGAGCCCC-GA-AGGGCGTTGGTTTTTTATCTAATAAATAC 318 ||||| || || ||| | |||||| || ||||| | | ||| |||||||| | Sbjct 58 TTATTCAGAGTCGCCACCTGCAGCCCCCGAGAGGGCATGG---TTTGCACTAATAAAAGC 114 Query 319 ACC-CCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 || || ||||||| | | || |||||||||||||||||||||||||| ||||||| Sbjct 115 ACATCCAACCGAAGTTGAACGTATTTGCATGTATTAGCTCTAGAATTACCACAGTTATCC 174 Query 378 ATGTAGTAAGGTACTATCAAAT-AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 | || || || ||| || ||| ||||||||||||||||||||||||| |||||| Sbjct 175 AATTAACAAAACAC-ATCCCATGAAATTATAACTGATTTAATGAGCCATTCGCGGTTTCA 233 Query 437 CTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 | | | | | || | ||||| |||||||||||||||||||| |||||||||||||| Sbjct 234 CCATTCTTGGGT-CTGA-ACTTATACATGCATGGCTTAATCTTTAAGACAAGCATATGAT 291 Query 496 TACTGGCAG 504 ||||||||| Sbjct 292 TACTGGCAG 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510366605056