Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4471 203 1e-49 seq7202 125 3e-26 >seq4471 Length=24596 Score = 203 bits (224), Expect = 1e-49 Identities = 220/295 (75%), Gaps = 19/295 (6%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||| |||| | |||||||| | ||| | | || Sbjct 19272 CCCGTCTTGAAACACGGACCAAGGAGTCTGACATATGTGCGAGTGCTCGGGGTTTATCCC 19331 Query 468 CGTGCGCGTAATGAAAGTGAACGG-----------------AGGTGGGAACCCGTGAGGG 510 | ||||||||||||||| || | |||| ||| | | | Sbjct 19332 CCAGCGCGTAATGAAAGTAAAAGTGTAACTTTGGTTCGCTTAGGTAGGATGTCTTCGGAC 19391 Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTG 568 |||| ||||||||| | |||| |||| || | ||||||| ||||||| ||| | Sbjct 19392 AGCACTATCGACCGACCATGATCTCTTGAGAGAAAGGTTTGAGTGTGAGCATATATGTCG 19451 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 19452 GGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGCCAGGGGAAACTCTGGTGGA 19511 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||| |||| ||||||||| ||||||| || |||||||||| ||||| Sbjct 19512 GGTCCGTAGCGATTCTAACGTGCAAATTGATCGTCGAACTTGGGTATAGCGGCGA 19566 Score = 192 bits (212), Expect = 2e-46 Identities = 142/166 (86%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||||||||||||||| ||||||||||| ||| |||||||| | ||||||| Sbjct 18964 TTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCTAATCGGGTGGTAAATTCCATCTAAAG 19023 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| ||||||||||| | ||||||| |||| ||||||||||||| ||| Sbjct 19024 CTAAATATTGGTGGGAGACCGATAGTGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 19083 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| ||||||||||||| || || |||||||| ||||| |||| || Sbjct 19084 TTGAAAAGAGAGTTAAACAGTACCTGAAATTGCTGAAAAGGAACCG 19129 Score = 138 bits (152), Expect = 5e-30 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||||||||| ||| |||||||| |||||| |||| Sbjct 2497 GTTGGTACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 2556 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 2557 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCTGAGCTGGGTATAGGGGCGA 2615 Score = 114 bits (126), Expect = 5e-23 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||| |||| || |||||| | | ||||| ||||||| Sbjct 1467 GAGTCGGGTTGCTTGAGATCGCAGCCCTAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 1526 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1527 ACAACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 1586 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1587 AGAGAGTTCAAGAGTACGTGAAA 1609 Score = 75.2 bits (82), Expect = 5e-11 Identities = 69/87 (79%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG---TGT 461 || ||||||||| |||||||||||||||||||||||| | |||||| |||| | Sbjct 2276 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCAATGGGACCTTC 2335 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488 |||||| |||||||||||||||| Sbjct 2336 TAAACCCAAAGGCGTAATGAAAGTGAA 2362 >seq7202 Length=3486 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 2048 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 2107 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 2108 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 2167 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 2168 TAGGGGCGA 2176 Score = 82.4 bits (90), Expect = 3e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 |||| |||||||| | ||||||||||| ||||||| |||| ||||| |||||| Sbjct 1044 TAAAACTAAATATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAA 1103 Query 149 GCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 | ||| || | ||||||||||| || |||||||| || | | ||| Sbjct 1104 GAACTCTGAATAGAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 1148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079565444450