Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq17938 158 2e-36 seq1822 150 2e-34 seq14106 114 2e-23 >seq17938 Length=2741 Score = 158 bits (174), Expect = 2e-36 Identities = 185/247 (75%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| ||||||| | ||||| ||| | || Sbjct 125 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTCTTTGCAGAGTGCT 183 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG- 125 ||||||||| ||||||||||| || | ||||||||||||| |||| || | Sbjct 184 GTGTTTTTATTAAACAGTCGCAGCCACCGATTCTCTGCGACCTTGTTGGGCTCCCCAAGT 243 Query 126 ---TCGTTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | ||||||| | ||||| |||||| |||||||||||| | || |||||||| | Sbjct 244 AAATGGTTCACCTACTTAAGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGT 303 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| ||| ||||| | | | |||||||| || ||| | | |||| ||||||||| Sbjct 304 TCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTT 363 Query 242 TACGGTA 248 | ||||| Sbjct 364 TGCGGTA 370 >seq1822 Length=724184 Score = 150 bits (166), Expect = 2e-34 Identities = 184/247 (74%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||||||||| || ||||| || ||||| ||| || ||| Sbjct 156362 TTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTTA-CGTGTTTGCAGA 156420 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||||||||||||||||| | | ||||| | || ||||| |||| Sbjct 156421 GTCCTGTGTTTTTAGTAAACAGTCGCTACTCCCTATTTTGTG------CCACCTACTCAT 156474 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | | |||| || ||||||| |||||||||| || | |||||||| | Sbjct 156475 AGTTTCCT--AAAAGCA--GGTTACCCTTCTTCCGAAGTTACAGGTATAATTTGCCGAGT 156530 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || ||| | ||| ||||||||| |||||| ||||| ||||||||| Sbjct 156531 TCCTTCAACATCATTCTTTC-AACACCTTAGTATACTCTACTCATCCACCAGTGTCGGTT 156589 Query 242 TACGGTA 248 ||||||| Sbjct 156590 TACGGTA 156596 >seq14106 Length=4562 Score = 114 bits (126), Expect = 2e-23 Identities = 172/247 (70%), Gaps = 23/247 (9%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||| |||| || ||||| || |||| | || || ||| Sbjct 1473 TTAACCTTCCAGCACCGGGCAGGAGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1415 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||| ||||||||||| ||| || ||| ||||| || | Sbjct 1414 GTGCTGTGTTTTTGATAAACAGTCGCAACCCCCTCTTCACTGCGGCCTAC---------- 1365 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || || ||| |||| |||||||||||||| | | |||||||| | Sbjct 1364 -------TT-----GCGTAGGCGAACCTTATCCCGAAGTTACGGTTCAAATTTGCCGAGT 1317 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| || ||||| | | |||||||||| || |||| | | ||||||||||||||| Sbjct 1316 TCCTTCTCCCGAGTTCTCTCAAACGCCTTAGGATACTCTCCTCGCCCACCTGTGTCGGTT 1257 Query 242 TACGGTA 248 | |||| Sbjct 1256 TGGGGTA 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694263717707