Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq14106 89.7 5e-16 seq17938 75.2 1e-11 >seq14106 Length=4562 Score = 89.7 bits (98), Expect = 5e-16 Identities = 128/175 (73%), Gaps = 9/175 (5%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || | || ||| |||||||| ||||| ||| || ||| Sbjct 1255 CAAACCGACACAGGTGGGCGAGGAGAGTATCCTAAGGCGTTTGAGAGAACTCGGGAGAAG 1314 Query 84 GAACTAGGCAAACT-GACCCTGTAACTTCGGGATAAAGGGTC-CCTACCCAGAAATGGGA 141 ||||| |||||| | || || ||||||||||||| |||| || ||||| || | | Sbjct 1315 GAACTCGGCAAATTTGAACC-GTAACTTCGGGAT-AAGGTTCGCCTACGCA-----AGTA 1367 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| ||| || |||||||| ||||||||||| || ||| || Sbjct 1368 GGCCGCAGTGAAGAGGGGGTTGCGACTGTTTATCAAAAACACAGCACTCTGCAAA 1422 >seq17938 Length=2741 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| ||||| || || | ||| ||| |||||||||||||| ||| || | Sbjct 367 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCTGGAGA 308 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT 127 ||||||| |||||| |||| | |||||||||| | || | || ||| Sbjct 307 AGGAACTCGGCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531095747186