Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq14106 439 6e-121 seq17938 383 4e-104 seq1822 300 4e-79 >seq14106 Length=4562 Score = 439 bits (486), Expect = 6e-121 Identities = 349/420 (83%), Gaps = 32/420 (8%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||||| Sbjct 1669 CGCGGGAACACTGCATCGTCACAGCGATTTCAATTTCACTGAGCCTCGGAAGGAGACAGT 1610 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 GGGGCTATCGTTACTCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1550 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||| |||||||||||||||||||| || || Sbjct 1549 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTTGCCTTG 1490 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 ||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1489 CGGCTGACCCCATCAATTAACCTTCCAGCACCGGGCAGGAGTCACACCCTATACGTCCAC 1430 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 |||||||||||||||||||||||||||| ||||||||||||| | || ||||| | Sbjct 1429 TTTCGTGTTTGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAACCCCC-----TCTTC-A 1376 Query 299 C--CGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356 | |||| | ||| || | |||| ||||| ||||||||| Sbjct 1375 CTGCGGCCT--ACTTGCGTA--------------------GGCGAACCTTATCCCGAAGT 1338 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 |||||| | |||||| ||||||||| ||||||||||||||| |||||| | || |||| Sbjct 1337 TACGGTTCAAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAACGCCTTAGGATACTCT 1278 >seq17938 Length=2741 Score = 383 bits (424), Expect = 4e-104 Identities = 297/351 (85%), Gaps = 12/351 (3%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 60 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 ||||||| |||||||||||||||||| ||| |||| ||||||||||| || || Sbjct 61 CCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC--------AC 111 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct 112 CCCATCAATTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTCGTCT 171 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 ||||||||||||||||||||| |||||||||||||| || | ||| ||||| || Sbjct 172 TTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTCTCTGCGACCTTGTTG 231 Query 307 AGCTTACGGAGCAAGTCCTTCACC--CTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 ||| | || || | |||||| || | ||| |||||||| |||||||||||||| Sbjct 232 GGCTCCCCAAGTAAATGGTTCACCTACTTA-AGGCACACCTTCTTCCGAAGTTACGGTGT 290 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 | |||||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 291 CAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 341 >seq1822 Length=724184 Score = 300 bits (332), Expect = 4e-79 Identities = 234/279 (84%), Gaps = 9/279 (3%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||| | |||||| ||| | || ||||||||| |||| | ||||||||| Sbjct 156177 CGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGTGATGTTGGAGACAGT 156236 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 156237 GGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 156296 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 |||||||||| | ||||||||||||||||||| |||||||| || ||||||| || Sbjct 156297 TTAGGACCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATTTAGAGCTT-GC---- 156351 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||| | ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 156352 ----ACCCCTCCTATTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTT 156407 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||||| ||||||||||| ||||||||||| Sbjct 156408 ACGTGTTTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 156446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260544574528