Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1822 280 3e-73 seq14106 260 3e-67 seq17938 230 5e-58 >seq1822 Length=724184 Score = 280 bits (310), Expect = 3e-73 Identities = 283/367 (77%), Gaps = 21/367 (6%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||| ||| |||| | ||||||| | || || | ||||||||| || Sbjct 156183 TACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGTGATGTTGGAGACAGTGGAGAA 156242 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156243 ATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 156302 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||| | |||||||||||||||||||||||||| | || | || |||| || Sbjct 156303 CCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATTTAGAGC-----TTGC----AC 156353 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||||||||||||||||||||| ||||||| || ||| || | Sbjct 156354 CCCTCCTATTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTTACGTGT 156413 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCA 299 | ||||| ||||||||||| ||||||||||||| |||||| | ||| ||| ||| Sbjct 156414 TTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCTACTCCCTATTTTGTGCCACCTACTCA 156473 Query 300 TAG----------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 ||| |||| ||||||| || ||||||| || | ||||||||||||| Sbjct 156474 TAGTTTCCTAAAAGCAGGTTACCCTTCTTCCGAAGTTACAGGTATAATTTGCCGAGTTCC 156533 Query 350 TT-AACA 355 || |||| Sbjct 156534 TTCAACA 156540 >seq14106 Length=4562 Score = 260 bits (288), Expect = 3e-67 Identities = 276/360 (77%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| | |||| ||||||||| ||| || ||||||||| |||||| Sbjct 1657 GCATCGTCACAGCGATTTCAATTTCACTGAGCCTCGGAAGGAGACAGTGGGGCTATCGTT 1598 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1597 ACTCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1538 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAGAT 184 |||||||||||||||||||||||||||| | | |||| | |||| || || Sbjct 1537 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTTGCCTTGCGGCTGACCCCA 1478 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | ||||||||||||||||||||||| |||| ||||||| || ||| || || || Sbjct 1477 TCAATTAACCTTCCAGCACCGGGCAGGAGTCACACCCTATACGTCCACTTTCGTGTTTGC 1418 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC 304 ||| ||||||||||| ||||||||||| ||| ||| ||||||||| | | Sbjct 1417 AGAGTGCTGTGTTTTTGATAAACAGTCGCAACCCCCTCTTCACTGCGGCCT-ACTTGCGT 1359 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||| |||| |||| ||||||||| | ||||||||||||||| | ||||||| Sbjct 1358 AGGCGAACCTTATCCCGAAGTTACGGTTCAAATTTGCCGAGTTCCTTCTCCCGAGTTCTC 1299 >seq17938 Length=2741 Score = 230 bits (254), Expect = 5e-58 Identities = 249/330 (75%), Gaps = 35/330 (11%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 60 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||| ||| | | | || |||| | | Sbjct 61 CCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACC 112 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 || | |||| ||||||||||||||||||||||| ||||||| ||| ||| || || Sbjct 113 CCAT-CAATTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTCGTCT 171 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-TGT-- 297 | ||||| |||||||||| ||||||||||| || |||||||||| || ||| Sbjct 172 TTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTCTCTGCGACCTTGTTG 231 Query 298 -------CA--TAGA--------------CAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || | |||||| |||||| || ||||||||| ||| Sbjct 232 GGCTCCCCAAGTAAATGGTTCACCTACTTAAGGCACACCTTCTTCCGAAGTTACGGTGTC 291 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 | ||||||||||||||| | | ||||||| Sbjct 292 AATTTGCCGAGTTCCTTCTCCAGAGTTCTC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062184768384