Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4471 307 2e-81 seq1750 242 6e-62 seq2257 100 5e-19 >seq4471 Length=24596 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 17761 ACTCGTTGCGTATGTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 17702 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||| | ||||||| | || | | || | |||||||||||||||||| | Sbjct 17701 CCTGTTATTGCCCCCAACTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGCCAACA 17642 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | || || | ||| | |||||||||||| |||||||||||||| ||||||| Sbjct 17641 TCAATACAAAGCATTGATATGACTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATT 17582 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17581 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 17522 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| Sbjct 17521 AAAGAGCTATCAATCTGTC 17503 >seq1750 Length=152056 Score = 242 bits (268), Expect = 6e-62 Identities = 210/259 (81%), Gaps = 15/259 (6%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 2268 CCTTCAGTGTAGCGCGCGTGCTGCCCAGAACATCTAAGGGCATTACAGACCTGTTATTGC 2209 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC----CACCAAC- 127 | || ||||| ||||||||||| | |||||||||||||| | | || | Sbjct 2208 CCCA--CTTCCTGCGGCTGGAAGCCGCTTGTCCCTCTAAGAAGAGTGTTGGTCGCCGGCT 2151 Query 128 -CATAGTCGATGGGG-------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || |||| | ||| |||| ||| || | ||||||||||||||| |||| Sbjct 2150 GCACAGGGGATGCCGGTTTCGACTAGTTAGTAGGGTAGGATCTCGTTCGTTATCGCAATT 2091 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2090 AAGCAGACAAATCAATCCACGAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAG 2031 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 2030 AAAGAGCTCTCAATCTGTC 2012 >seq2257 Length=135962 Score = 100 bits (110), Expect = 5e-19 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||||||| |||||| ||||||| | | | ||||||||||||||| ||||||| Sbjct 41863 GTTCGTTATCGGGATTAACTTGACAAATTATTTGAATAACTAAGAACGGCCAAGCACCAC 41922 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||||| |||||| || ||||| Sbjct 41923 TGCCCATTGAATCAAGAAAAAGCTATAAACCTGTC 41957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796643620779