Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq265 316 3e-84 seq4471 313 4e-83 seq82 260 2e-67 seq1965 206 5e-51 seq897 125 1e-26 seq464 104 4e-20 seq1313 100 5e-19 >seq265 Length=641558 Score = 316 bits (350), Expect = 3e-84 Identities = 187/195 (96%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 448143 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 448202 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 448203 GTTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 448262 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 448263 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 448322 Query 210 CCTGTGGTAACTTTT 224 ||||||||||||||| Sbjct 448323 CCTGTGGTAACTTTT 448337 Score = 215 bits (238), Expect = 9e-54 Identities = 161/187 (86%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||||||||| |||||| || |||||||| || |||||||||||||||||||||| Sbjct 452029 GGGTGAACAATCCGACGCTTGGCGGATTCTGCTCCGCAATGATAGGAAGAGCCGACATCG 452088 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 452089 AAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 452148 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||| ||||||| || ||| ||| | | | ||||||||||| |||| Sbjct 452149 GTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGATGGGCCG 452206 Query 274 CACTTTC 280 ||||| Sbjct 452207 TGCTTTC 452213 Score = 123 bits (136), Expect = 4e-26 Identities = 94/111 (85%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 448680 CAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACT 448739 Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 |||||| ||||||| | ||| | | | |||||||||||||||| Sbjct 448740 TTTCTGACACCTCTTGTTAAAAACTCCTTAAACCAAAAGGATCGATAGGCC 448790 >seq4471 Length=24596 Score = 313 bits (346), Expect = 4e-83 Identities = 199/216 (92%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 23008 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 22949 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||| || ||| || |||||| | ||||||||||||||||| Sbjct 22948 TTAGTGGGTGAACAATCCTACACTTTGTGACTTCTGCGACACAATGATAGGAAGAGCCGA 22889 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22888 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 22829 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||| |||||||||| | ||||| Sbjct 22828 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATT 22793 Score = 168 bits (186), Expect = 1e-39 Identities = 122/139 (88%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 5050 GAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA 4991 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT--TCGAGGGACTAAAGG 261 |||||||||||||||||||||||| ||||||| ||| ||| | ||||| | ||||| Sbjct 4990 GTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCCGAAAACTCTTCGAGCCA--AAAGG 4933 Query 262 ATCGATAGGCCACACTTTC 280 |||||||| || ||||| Sbjct 4932 ATCGATAGACCGTGCTTTC 4914 >seq82 Length=1013098 Score = 260 bits (288), Expect = 2e-67 Identities = 165/179 (92%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 |||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||| Sbjct 820648 TAACCTGTCTCACGACGGTCTAAACCCACCTCACGTTCCCTATTGGCGGGTGAACAATCC 820707 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 || ||| || |||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 820708 GACACTTGGCGGATTCTGCTCCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 820767 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 820768 CGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 820826 >seq1965 Length=104177 Score = 206 bits (228), Expect = 5e-51 Identities = 172/212 (81%), Gaps = 20/212 (9%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 46314 GTCATCAGCAGGGCAAAACTAACCTATCTCACTACGGTCTAAACCCAGCTCACGTTCCCT 46373 Query 90 ATTAGTGGGTGAACAATCCAACGCTT--AC--------------CGAATTCTGCTTCGGT 133 ||||| |||||||||||||||||||| || || |||||||| | Sbjct 46374 ATTAGCGGGTGAACAATCCAACGCTTTAACAATCCGACGATGGGCGGATTCTGCTCCTAA 46433 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||| ||| |||||||||||||||| | ||||| ||||||||||||| Sbjct 46434 ATGATAGGAAG----GACGTCGAAGGATCAAAAAGTGAAGTCGCAATGAACGCTTGGCAA 46489 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||||||||||| ||||||||||| ||||| Sbjct 46490 CCACAAGCCAGTTACCCCTGTGGTAATTTTTC 46521 >seq897 Length=238588 Score = 125 bits (138), Expect = 1e-26 Identities = 135/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 || |||||| | || ||||||| |||||| |||| ||||| ||| |||| |||| Sbjct 13360 AAGCTGTCTAACAACAGTCTAAATGAAGCTCAACTTCCATATTATTGGATGAAGAATCTG 13301 Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA-- 167 || ||| | ||| |||| | |||| |||||||| ||||||| |||||| | ||| Sbjct 13300 ACACTTGGTGGATTATGCTCCACAATGAAAGGAAGAGGCGACATCCAAGGATGATAAAAC 13241 Query 168 ----GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 || |||||||||||||||||| || | |||||| |||||||||||| ||||||| Sbjct 13240 GATAGCGACGTCGCTATGAACGCTTAGCCACTACAAGCAAGTTATCCCTGTTGTAACTT 13182 >seq464 Length=468895 Score = 104 bits (114), Expect = 4e-20 Identities = 94/116 (81%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG-TGGGTGAACAATCCA 109 ||||||| |||||||||||||||||||||||| ||||||||| | |||| | |||| Sbjct 78818 ACCTGTCCCATGACGGTCTAAACCCAGCTCACTTTCCCTATTGGCACGGTGGAGAATCTG 78877 Query 110 ACGCTTACCGAATTCTG--CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 || |||| | |||||| | || |||| ||||||||||||||||||| ||||| Sbjct 78878 ACTCTTAGTGGATTCTGTTCCCCGCAATGACAGGAAGAGCCGACATCGAATGATCA 78933 >seq1313 Length=259692 Score = 100 bits (110), Expect = 5e-19 Identities = 93/119 (78%), Gaps = 7/119 (6%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT-------CCAACGCTTACC 118 |||||||| |||||||| ||||||||| | || |||||||| || |||||| Sbjct 252313 GTCTAAACTCAGCTCACTTTCCCTATTGGCGGATGAACAATGAACAATCCGACGCTTGAT 252372 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 | |||||| | | |||| ||||||||||||||||||||||| |||| || ||||||| Sbjct 252373 GGATTCTGTTCCACAATGACAGGAAGAGCCGACATCGAAGGATAAAAATGCGACGTCGC 252431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854226907104