Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1822 304 3e-80 seq18426 266 7e-69 seq12515 246 6e-63 >seq1822 Length=724184 Score = 304 bits (336), Expect = 3e-80 Identities = 270/335 (81%), Gaps = 17/335 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||||| ||| || ||| ||| ||||||||||||||||||||| Sbjct 257762 CTTTACAACCCAAAGGCCTTCTT-CACTCATGCGACAT-GGCTGGATCAGGCTTTCGCCC 257819 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 257820 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAG 257879 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||| ||| || |||| | |||||||| || ||||| || Sbjct 257880 TGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTATTACTCCA 257939 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | ||||||||||| ||| |||| || || Sbjct 257940 CCAACTAGCTAATCTAATATAGGCTCATCTAATA--GCAA-----TAA--------ATTT 257984 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| ||||| ||||||||| || ||||| | |||| || ||||| || Sbjct 257985 TCCCCCGTAGGGCGTATACGGTATTAGTTGCCATTTCCAACAATTATTCCGTACTACTAG 258044 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||||||||| |||||||||||||| ||| || Sbjct 258045 GTAGATTCCTATATATTACTCACCCGTCTGCCACT 258079 >seq18426 Length=1291 Score = 266 bits (294), Expect = 7e-69 Identities = 239/298 (80%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 GCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 60 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||||||||||| |||||||| ||| || ||||||||||||| ||| |||||| || Sbjct 61 GGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAACTACAGATCGTTGC 120 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAA 220 |||||| ||| ||||| |||||||||||||||| || | ||| || ||||||| | Sbjct 121 CTTGGTAGGCCTTTACCCCACCAACTAGCTAATCTGATATCGGCCGCTCCAATAGCGCGA 180 Query 221 GGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCG--TTTCC 278 || | | ||||| |||||| ||| ||| | ||||||||||| |||| |||| Sbjct 181 GGTCTTGCGATCCCCCGCTTTCACCCTCAGGTCTCATGCGGTATTA--ATCCGGCTTTCG 238 Query 279 GAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | ||||||||||||| |||| |||| | ||||||||||||| |||| ||| Sbjct 239 CCGGGCTATCCCCCACTACTGGGCACGTTCCGATATATTACTCACCCGTTCGCCACTC 296 >seq12515 Length=3908 Score = 246 bits (272), Expect = 6e-63 Identities = 221/275 (80%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 63 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 122 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 3103 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 3162 Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || ||| || |||||||||||||| ||| |||||| | ||||||| || ||||| |||| Sbjct 3163 TGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTTGGCTTGGTGGGCTTTTACCCCACC 3222 Query 183 AACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTC 242 ||||| |||||| || | ||| || || |||| ||| | | ||||| |||||| Sbjct 3223 AACTACCTAATCTGATATCGGCCGCTCCAATCGCGCGAGGTCTTGCGATCCCCCGCTTTC 3282 Query 243 TCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAAC-GTTATCCCCCACTACCAGG 301 ||| ||| |||||||||||||||| | | || ||| | |||||||||||| || || Sbjct 3283 ACCCTCAGGTCGTATGCGGTATTAGC-TGCTCTTTCGAGCAGTTATCCCCCACGACTGGG 3341 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | |||||||||||||| |||| ||| Sbjct 3342 CACGTTCCGATACATTACTCACCCGTTCGCCACTC 3376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071782823520