Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1822 365 2e-98 seq17938 343 5e-92 seq14106 291 3e-76 seq12515 104 8e-20 >seq1822 Length=724184 Score = 365 bits (404), Expect = 2e-98 Identities = 418/553 (76%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGC 110 || ||||||||||||||| ||||| |||||| | || |||||||| | ||||||||| Sbjct 157189 GGTATTCGGAGTTTGGTTAGATTT-GGTAAGATGATGAATCCCCCTAGTCTATCCAGTGC 157247 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| || || | ||| | ||||| |||||||| |||||| |||||||||||| Sbjct 157248 TCTACCCCCAACAACATACATACAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCT 157307 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 || | ||||||||||||||||||||||||| |||| |||||| | | || |||| Sbjct 157308 ATTTCCAAGTTTGATTGGCCTTTCACCCCTAATCACAACTCATCCAATAATGTTGCAACA 157367 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | | |||||| |||| || || ||||| |||||| ||| |||| |||||| Sbjct 157368 TTAACTGGTTCGATCCTTCAGTATGTTTTACCATACCTTCAATCTGGTCATGACTAGATC 157427 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 |||| | ||||||||| | | ||| | ||||||||||| |||| ||||||||||| Sbjct 157428 ACTTGGTTTCGGGTCTAATCCATAAAACTAACACGCCCTATTCAGACTTGCTTTCGCTAC 157487 Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 | |||| || |||| |||| || || || | ||||||| | | |||| | |||| Sbjct 157488 GCCTACACCTAACGGCTTAAGCTTGCTTCA-TAGATTAACTCGCTGACCCATTATGCAAA 157546 Query 411 AGGCACGCCGTCAC-CT-GGTACC--TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||| |||| ||||| || || | |||| | | |||||| || | ||||| ||| Sbjct 157547 AGGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCA 157606 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | || |||||| | |||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 157607 CTTGATTTCAGATTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGT 157666 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 |||||| | ||||||||| ||||||||||||||||| || ||||||| ||| |||| Sbjct 157667 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 157726 Query 587 ACACGAAATTTCA 599 | || |||||| Sbjct 157727 AAACAGGATTTCA 157739 >seq17938 Length=2741 Score = 343 bits (380), Expect = 5e-92 Identities = 409/548 (75%), Gaps = 19/548 (3%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| |||||||||||| | || |||||| | | |||||||| | | |||||| Sbjct 1042 CGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGC 1101 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| ||| | | || || || || |||||||| |||||| ||||||||||| Sbjct 1102 TCTACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCT 1160 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 || | ||||||| || ||||||||||||||||||||| |||||| || | ||| |||| Sbjct 1161 ATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCTAATTTTGCAACA 1220 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | ||| ||||||| |||||| || ||||| ||||| |||| ||||||||||||| Sbjct 1221 TTAGTCGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATC 1280 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 |||| | ||||||||| | | || ||| | |||||||||||||||||| |||| || | Sbjct 1281 ACTTGGTTTCGGGTCTACACCCAGCGACT-AGACGCCCTATTCGGACTCGATTTCTCTTC 1339 Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 |||| ||| | | |||||||||||| || || | || |||| | | |||| | |||| Sbjct 1340 GGCTTCCCTATTC-GGTTAACCTCGCCACTGAATG-TAAGTCGCTGACCCATTATACAAA 1397 Query 411 AGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATG 470 ||| |||||||||| ||| || |||||||| ||||| ||| | Sbjct 1398 AGGTACGCCGTCAC------CCT----TGC----GGGCTCCGACTTTTTGTATGCATGCG 1443 Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| || ||||| |||||| ||||||||||||||||||| Sbjct 1444 GTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTT 1503 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || | ||||||||| | |||||||||| ||| || ||||||| ||| |||| || Sbjct 1504 GTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGAC 1563 Query 591 GAAATTTC 598 ||||| Sbjct 1564 AGGATTTC 1571 >seq14106 Length=4562 Score = 291 bits (322), Expect = 3e-76 Identities = 403/558 (72%), Gaps = 22/558 (4%) Strand=Plus/Minus Query 46 ACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG--CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| || |||||| ||| || |||||||| | Sbjct 585 ACTTCAGGGTATTCGGAGTTTGCAACGGTTTGGTAAGGACTTATGTCCCCCCTAGCCGTA 526 Query 104 CCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGA 163 |||||||||||| || || | | |||||| || |||| ||| ||||| ||||| Sbjct 525 ACAGTGCTCTACCCCCCTGA-GTTAGACGCGAGGCGCTACCTCAATAGCTTTCGAGGAGA 467 Query 164 ACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTT 223 |||||||||||| |||||| ||||||||| |||||||||| ||||| || || Sbjct 466 ACCAGCTATCACCCGCCTTGATTAGCCTTTCACTCCTATCCACACCTCATCTCCGACTTT 407 Query 224 TTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGG 283 |||||| ||| |||||| |||||| || ||||| ||||| |||| ||||| Sbjct 406 TTCAACAGGCGTGAGTTCGGGCCTCCATTGTGTGTTACCACAACTTCACCCTGGACATGG 347 Query 284 ATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTT 343 ||||||| | ||||||||| | | ||| ||| | ||||||||| |||||| || Sbjct 346 ATAGATCGACGGGTTTCGGGTCTACAGCCTGCAACTGGT-CGCCCTATTAAGACTCGGTT 288 Query 344 TCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATT 403 || ||||| || ||| | || ||||| || || ||| | || |||| | | |||| Sbjct 287 TCCCTACGCCTTCCCTATAC-GGTTAGGCTTGCTACAGACTAGTAAGTCGCTGACCCATT 229 Query 404 CTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC-AGCTCCGACGGATTGTA 462 | ||||||| ||||| |||| ||| ||| |||| ||| | ||||| Sbjct 228 ATACAAAAGGTACGCCATCAC------CCT---------TTCGGGCTCTGACTGCTTGTA 184 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| |||||||||| |||||||||||||| | ||||||| |||||| |||||||||| Sbjct 183 CGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTC 124 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | ||||||||| ||| |||||||||| ||| || ||||||| ||| Sbjct 123 ACGGTACTGGTTCACTATCGGTCGGCAACGAGTATTTAGCCTTGGAGGATGGTCCCCCCA 64 Query 582 GATTCACACGAAATTTCA 599 ||||| || | ||||| Sbjct 63 TATTCAGACAAGGTTTCA 46 >seq12515 Length=3908 Score = 104 bits (114), Expect = 8e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 ||||||| || ||||| |||||| ||||||||||||||||||||| | ||||||||| Sbjct 1 ACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGAT 60 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||| ||| || ||||||| ||| ||||| || |||||| Sbjct 61 TACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCA 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817231772416