Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq17938 419 6e-115 seq14106 379 5e-103 seq1822 262 1e-67 seq12515 168 2e-39 seq18566 131 4e-28 seq4471 73.4 1e-10 >seq17938 Length=2741 Score = 419 bits (464), Expect = 6e-115 Identities = 350/415 (84%), Gaps = 14/415 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| ||||||| |||| |||| |||||||||||| |||||||| | Sbjct 1188 CCTATCCACAGCTCAT-CCGCTAA-TTTTGCAACATTAGTCGGTTCGGACCTCCAGTGCG 1245 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 1246 T-GTTACCGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 1300 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||||||||||||| | |||||| ||| | || || || |||||||||||||| Sbjct 1301 CCAGCGACTAGACGCCCTATTCGGACTCGATTT-CTCTTCGGCTTCCCTATTCGGTTAAC 1359 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || ||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1360 CTC-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCTT--- 1415 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||| ||| ||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 1416 -GCGGGCTCCGACTTTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 1473 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 1474 GGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGATTACGAGTATTTAG 1533 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct 1534 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCTCGTGTCCCGCCCTACT 1588 >seq14106 Length=4562 Score = 379 bits (420), Expect = 5e-103 Identities = 345/421 (82%), Gaps = 18/421 (4%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCAT-TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTT 61 ||| ||||||| |||| |||| ||||||||||| | || |||||| |||||| | Sbjct 433 TCCTATCCACACCTCATCTCCG---ACTTTTTCAACAGGCGTGAGTTCGGGCCTCCATTG 377 Query 62 AGTAGTTACC-CAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTAT 120 || |||||| |||| |||| |||| ||| |||||||||| | ||||| |||||||| Sbjct 376 TGT-GTTACCACAAC--TTCACCCTGGACAT-GGATAGATCGACGGGTTT-CGGGTCTAC 322 Query 121 TTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTT 180 || || ||| | ||||||| ||||||||| ||| | |||||||| |||||| ||||| Sbjct 321 AGCCT-GCAACTGGTCGCCCTATTAAGACTCGGTTTCC-CTACGCCTTCCCTATACGGTT 264 Query 181 AAGCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA 239 | |||| || || || | |||||||||||||||||||||||||||||||| |||||| Sbjct 263 AGGCTT-GCTACAGACTAGTAAGTCGCTGACCCATTATACAAAAGGTACGCCATCACCCT 205 Query 240 ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCT 299 |||||| ||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 204 TTC----GGGCTCTGACTGCTTGTACGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCA 149 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 | ||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| Sbjct 148 CAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGCAACGAGTAT 89 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||||||||||||| ||||| ||||| || | ||||| Sbjct 88 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTCACGTGCCTCGCCTTACTC 29 Query 420 G 420 | Sbjct 28 G 28 >seq1822 Length=724184 Score = 262 bits (290), Expect = 1e-67 Identities = 300/391 (77%), Gaps = 24/391 (6%) Strand=Plus/Plus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 |||||| |||| |||| || ||||| ||||| ||| ||| ||| | |||||| | Sbjct 157374 GGTTCGATCCTTCAGTATGTT-TTACCATACCTT-CAATCTGGTCAT-GACTAGATCACT 157430 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAG-ACGCCCTAGTAAGACTCGCTTTTCGCTAC 163 ||||| |||||||| | | | |||| |||||||| | ||||| ||||| |||||| Sbjct 157431 TGGTTT-CGGGTCTAATCCATAAA-ACTAACACGCCCTATTCAGACTTGCTTT-CGCTAC 157487 Query 164 GCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAA 222 |||| | |||| | |||||||| || | | | ||| ||||||||||||||| |||| Sbjct 157488 GCCTACACCTAACGGCTTAAGCTT-GCTTCATAGATTAACTCGCTGACCCATTATGCAAA 157546 Query 223 AGGTACGCAGTCACCC--------AACAAAGTGG------GCTCCCACTGCTTGTACGCA 268 |||||||| ||||| | || ||| || ||||| |||| ||||| ||| Sbjct 157547 AGGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCA 157606 Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 | |||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 157607 CTTGATTTCAGATTCTATTTCACTCCCCTC-CCGGGGTTCTTTTCACCTTTCCCTCACGG 157665 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 388 |||| |||||||||||||| | || ||||||||| |||||||||||||||||||||||| Sbjct 157666 TACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATT 157725 Query 389 CAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||| |||| ||||| ||| |||||| Sbjct 157726 CAAACAGGATTTCACGTGCCCCGCTCTACTC 157756 >seq12515 Length=3908 Score = 168 bits (186), Expect = 2e-39 Identities = 116/130 (89%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 290 ACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAG 349 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ACTCCCCTC-CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGA 59 Query 350 TCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTC 409 | | |||||||||||||||||||||||||||||||||||||||| |||| |||| | Sbjct 60 TTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCACGTGTCC 119 Query 410 CGTCCTACTC 419 || ||||||| Sbjct 120 CGCCCTACTC 129 >seq18566 Length=2075 Score = 131 bits (144), Expect = 4e-28 Identities = 152/197 (77%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCT 260 |||||||||||||| |||||| |||||||| ||| || |||| |||| ||| |||||| Sbjct 761 AGTCGCTGACCCATGATACAAGAGGTACGCTATCATCC-ACAATGTGGACTCTAACTGCT 703 Query 261 TGTACGC-ATACGGTTTCAGGATCT-ATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC-T 317 || | || ||| |||||| |||| |||||| | |||| | || | ||||| || | Sbjct 702 TGAAAGCTATA-TATTTCAGTATCTAATTTCAATACCCTTTTAGGTTTCTTTTTCACCAT 644 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||| ||||||| ||||||||||||| | | || ||||||| ||| | || |||| Sbjct 643 TTCCCTCGCGGTACTTGTTCACTATCGGTTACAC-TTATTATTTAGGCTTTGTGGGTGGT 585 Query 378 CCCCCCATATTCAGACA 394 || | ||||||| ||| Sbjct 584 TCCACAATATTCAAACA 568 >seq4471 Length=24596 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/100 (77%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | || || |||| | ||| | ||||||||| ||||||||||||||| Sbjct 1612 CGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTA 1554 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 || |||| ||||||||| || |||||||||||| || Sbjct 1553 CTTGTTCGCTATCGGTCTCGTGGTTGTATTTAGCCTTAGA 1514 Score = 73.4 bits (80), Expect = 1e-10 Identities = 75/97 (77%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||||| || ||| |||| | | || | |||||||| ||||||||||||||||| Sbjct 19112 TTTCAGGTACTGTTTAACTCTCTTTTCAAAG-TTCTTTTCATCTTTCCCTCACGGTACTT 19054 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 |||||||||||||| || | |||||||| || || Sbjct 19053 GTTCACTATCGGTCTCCCACCAATATTTAGCTTTAGA 19017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241348464256