Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq14106 194 4e-47 seq17938 165 2e-38 seq1822 163 7e-38 >seq14106 Length=4562 Score = 194 bits (214), Expect = 4e-47 Identities = 293/406 (72%), Gaps = 13/406 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||||||||||||| |||||| |||| | || || || | | | Sbjct 1029 CGACTACGCCTTTCGGCCTCGCCTTAGGATCCGACTTACCCTGCGCCGAAAATCGTTGCG 970 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||||| ||||| | || || |||| | | || |||||||| | Sbjct 969 CAGGAAACCTTGGGCTTACGGCGTGCAGGTTTTTCACCTGCATTATCGTTACTCATGTCA 910 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 |||||| |||| | | ||||| || || | || | || |||||| || || Sbjct 909 GCATTCGCACTTCCGATACCTCCAGCA-ACCCTTACGAGTCACCTTCACAGGCTTACGGA 851 Query 179 ACGCTCCCCTACCCAACCACACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||| ||||| | | | | | ||| | ||||||||| || |||| |||| Sbjct 850 ACGCTCCTCTACCGCGC-ATATTGCTATGCACCCGCAGCTTCGGTATATCGCTTA-GCCC 793 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | ||| ||||||||||||||||||| ||||| || ||| Sbjct 792 CGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGAT 733 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT--CCACATCCTTTCCCACTGA 352 ||||||||| |||||||| |||||| |||||| | ||| ||||||| ||| ||||| | Sbjct 732 GGCTGCTTCTAAGCCAACATCCTGGCTGTCTATG--ACTTCCCACATCGTTTACCACTTA 675 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | | |||||| ||||||||| | |||||| ||| ||||||| Sbjct 674 GCGATAATTTAGGGACCTTAGCTGGCGGTCTGGGTTGTCTCCCTCT 629 >seq17938 Length=2741 Score = 165 bits (182), Expect = 2e-38 Identities = 287/405 (71%), Gaps = 18/405 (4%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 596 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 655 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGCA 122 ||| ||||| |||||| ||| || ||||| | |||||||||||| | ||| Sbjct 656 GAAACCTTGCGCTTTCGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGCA 715 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || | || | || |||||| || ||| || Sbjct 716 TTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACAGAAC 773 Query 181 GCTCCCCTACCCAACCACACAGGT-TGC---CACAGCTTCGGCGGATAACT---TAAGCC 233 |||| |||||| | || | | | ||| | ||||||||| ||||| | |||| Sbjct 774 GCTCTCCTACC-ACGCATATTGCTATGCATCCGCAGCTTCGG----TAACTGGCTTAGCC 828 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || || Sbjct 829 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAATGA 888 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||| ||||| ||| | || |||| || ||||||||| || Sbjct 889 TGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAG 948 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||||| ||||||||| | |||||| ||||||||||| Sbjct 949 CCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 992 >seq1822 Length=724184 Score = 163 bits (180), Expect = 7e-38 Identities = 289/417 (69%), Gaps = 22/417 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGT-CGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGAC 59 ||||||| ||| | ||| |||||||||||| |||||| |||| ||||| ||||| || Sbjct 156722 CGACTACTCCTTTACGGACTCGCCTTAGGAACCGACTAACCCTACGCAGATTAACTTAAC 156781 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 ||||||||| ||| | || | | | || ||| | | |||||||| ||| | Sbjct 156782 GTAGGAACCCTTAGATTTTTGGTGAGAGTGTTTTTCACACTCTTTTACGCTACTTATGTC 156841 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 ||||||||||| | | ||||| || |||| || |||||| ||| || Sbjct 156842 AGCATTCTCACTTCCGATATCTCCAGCAGTTT-TCACAAACCACCTTCACAGACTTACGG 156900 Query 178 GACGCTCCCCTACCCAACC----------ACACAGGTTGC---CACAGCTTCGGCGGATA 224 ||||||| ||||| || | || || |||| |||||| | | Sbjct 156901 AACGCTCCGCTACCGCGCCTATTGATCGAAATCAATAAGCACTCACATCTTCGGTATACA 156960 Query 225 ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACG 279 |||| ||||||| |||||| ||||||| ||| |||| ||| |||||||| ||||| Sbjct 156961 ACTTTAGCCCCGGTACATTTTCGGCGCAGAAAAACTTATTTAGACAAGTGAGCTGTTACG 157020 Query 280 CACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACAT 339 | ||||| ||||||||||||||||||||||||||||| | ||| | || || | Sbjct 157021 CTTTCTTTAAAGGATGGCTGCTTCCAAGCCAACCTCCTAGCTGTAATGGTTTTTCTACTT 157080 Query 340 CCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||| |||||| || | || ||| |||||| | ||||||||||||||||||| Sbjct 157081 CCTTCCCCACTTAGCTGTAATTTTGGGACCTTAGATAGTGATCTGGGCTGTTTCCCT 157137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177361430016