Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1822 322 1e-85 seq18426 311 2e-82 seq12515 289 7e-76 >seq1822 Length=724184 Score = 322 bits (356), Expect = 1e-85 Identities = 321/412 (78%), Gaps = 17/412 (4%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||||||| || ||| |||||||| ||||||||| ||||||| Sbjct 257762 CTTTACAACCCAAAGGCCTTCTTCACTCATGCGACATGGCTGGATCAGGCTTTCGCCCAT 257821 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 257822 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAGTG 257881 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| ||||||||||||| |||||| |||| | |||| ||| ||| ||||| || || Sbjct 257882 TGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTATTACTCCACC 257941 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||||| |||| | | || | |||| | | | Sbjct 257942 AACTAGCTAATCTAATATAGGCTCATCTAATAGCAATA------AATTTTCCCC-CGTAG 257994 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | ||| ||| ||||||||| || |||||| |||| || | | ||| Sbjct 257995 G----GCG----TATACGGTATTAGTTGCCATTTCCAACAATTATTCCGTACTACTAGGT 258046 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | | |||||||||||||| |||||| || | | |||||||| | Sbjct 258047 AGATTCCTATATATTACTCACCCGTCTGCCACTAAGTTATACCA-TAGCAAGCTACAATA 258105 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 258106 TAACTCCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCATTCTGAG 258157 >seq18426 Length=1291 Score = 311 bits (344), Expect = 2e-82 Identities = 293/373 (79%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 42 GCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1 GCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 60 Query 102 GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGC 161 || |||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| || Sbjct 61 GGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAACTACAGATCGTTGC 120 Query 162 CTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGA 221 || ||| |||| ||||||| |||||||||||||| || | || ||| |||| | || Sbjct 121 CTTGGTAGGCCTTTACCCCACCAACTAGCTAATCTGATATCGGCCGCTCCAATAGCGCGA 180 Query 222 GGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAG 281 || | | |||||| |||| | | | | ||||||||||| | |||| Sbjct 181 GGTCTTGCGATCCCCCGCTTTCACCCTCAGGTCTCATGCGGTATTAATCCGGCTTTCGCC 240 Query 282 TGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCA 341 || |||||||| | | |||| |||| | | ||||||||||||| ||||||||||| Sbjct 241 GGGCTATCCCCCACTACTGGGCACGTTCCGATATATTACTCACCCGTTCGCCACTCGTC- 299 Query 342 GCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAG 401 || || | ||| | ||||||||||||||||||||||| |||| ||||||||| Sbjct 300 GC-------CAGGTTGCCCCGCGTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAG 352 Query 402 CGTTCAATCTGAG 414 ||||||||||||| Sbjct 353 CGTTCAATCTGAG 365 >seq12515 Length=3908 Score = 289 bits (320), Expect = 7e-76 Identities = 273/351 (78%), Gaps = 13/351 (4%) Strand=Plus/Plus Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 3103 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 3162 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| |||||| | || ||||||| ||||||| || Sbjct 3163 TGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTTGGCTTGGTGGGCTTTTACCCCACC 3222 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| || | || ||| || | | |||| | | |||||| |||| Sbjct 3223 AACTACCTAATCTGATATCGGCCGCTCCAATCGCGCGAGGTCTTGCGATCCCCCGCTTTC 3282 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||||||||||||| | |||| || |||||||||| | | ||| Sbjct 3283 ACCCTCAGGTCGTATGCGGTATTAGCTGCTCTTTCGAGCAGTTATCCCCCACGACTGGGC 3342 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||| | ||||||||||||||| |||||||||||||| | ||| Sbjct 3343 ACGTTCCGATACATTACTCACCCGTTCGCCACTCGTCAGCTTA-------------ACCT 3389 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 3390 GTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 3440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222152353984