Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1822 358 2e-96 seq18426 176 1e-41 seq12515 136 1e-29 >seq1822 Length=724184 Score = 358 bits (396), Expect = 2e-96 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| |||| || ||||||||| | |||| |||| || ||||||| Sbjct 257953 GATTAGCTAGTTGGTGGAGTAATAGCCTACCAAGGCAATGATCTATAGCTGATCTGAGAG 257894 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 257893 GATGATCAGCCACACTGGAACTGAGATACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 257834 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||| ||||||||| |||||||||| |||| | | ||| |||| || ||||||||| Sbjct 257833 GAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGTCGCATGAGTGAAGAAGGCCTT 257774 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 |||| |||||||||| | |||||||||||||||||||| || |||| || || Sbjct 257773 TGGGTTGTAAAGCTCTTTTAGTGAGGAAGATAATGACGGTACTCACAGAAGAAGTCCTGG 257714 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| |||||||||||||||||||||||| || ||||||||||||| |||||||| | Sbjct 257713 CTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGAGGGCTAGCGTTATTCGGAATTA-TT 257655 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||||||| ||||||| | || ||||| Sbjct 257654 GGGCGTAAAGGGCGCGTAGGCTGATTAATAAGT 257622 >seq18426 Length=1291 Score = 176 bits (194), Expect = 1e-41 Identities = 133/157 (85%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 || ||||||||||||||| ||||| ||| ||||||||| |||||| |||| | |||| Sbjct 157 TCAGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCAACGATCTGTAGTTGGTCTGA 98 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 97 GAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 38 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 ||||||| ||| ||||||||| ||||||||| |||| Sbjct 37 GGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGC 1 >seq12515 Length=3908 Score = 136 bits (150), Expect = 1e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 || |||||| |||||||| ||||| || |||||| | |||||| ||||| | |||| Sbjct 3237 TCAGATTAGGTAGTTGGTGGGGTAAAAGCCCACCAAGCCAACGATCTGTAGCTGGTCTGA 3178 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 3177 GAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 3118 Query 284 GGGGAATATTGCACA 298 ||||||| ||| ||| Sbjct 3117 GGGGAATTTTGGACA 3103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497296601216