Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4471 295 1e-77 seq1750 212 1e-52 >seq4471 Length=24596 Score = 295 bits (326), Expect = 1e-77 Identities = 255/312 (82%), Gaps = 7/312 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || ||||||| |||||||||||| || | |||||| | | |||||||| Sbjct 17594 GAACGAGACCCCCGCCTGCTAAATAGTCATATCAATGCTTTGTATTGATGTTGGCTTCTT 17653 Query 78 AGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||||| |||| | | |||| ||||||| | |||||||||||||||||||||||| Sbjct 17654 AGAGGGACTTTCGGTGACTAACCGAAGGAAGTTGGGGGCAATAACAGGTCTGTGATGCCC 17713 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||||||| |||||||||||||||||||| | |||||||||| ||||| Sbjct 17714 TTAGATGTTCTGGGCTGCACGCGCGCTACACTGACATACGCAACGAGTTCT---CCTTGT 17770 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||||| ||||||||||| || | ||||||| | |||||||| |||||||||| Sbjct 17771 CCGAAAGGTCCGGGTAATCTTGA-AATGTATGTCGTGATAGGGATAGATTATTGCAATTA 17829 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || |||| |||||||||| |||||||| ||| ||||||||| |||||||||||||||| Sbjct 17830 TTAATCTTGAACGAGGAATTCCTAGTAAATGCGGGTCATCAGCTCGCGTTGATTACGTCC 17889 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 17890 CTGCCCTTTGTA 17901 >seq1750 Length=152056 Score = 212 bits (234), Expect = 1e-52 Identities = 204/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||||| | ||||| |||||| | ||||||||||||||||| Sbjct 2168 CTTCTTAGAGGGACAAGCGGCTTCCAGCCGCAGGAAGT--GGGGCAATAACAGGTCTGTA 2225 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||| |||||||||||||||||| | ||||| || | Sbjct 2226 ATGCCCTTAGATGTTCTGGGCAGCACGCGCGCTACACTGAAGGTATCAACGTGTGTTTT- 2284 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| || ||| | |||||| | | |||||| ||||||| ||||| | | ||| Sbjct 2285 CCTTGCTCGAGAGGGCCGGGTAACCCGTTGAAACTCCTTCGTGCTAGGGATTGGGGCTTG 2344 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | ||||||||||||||||||||||| | |||| | | || ||||| Sbjct 2345 CAATTATTCCCCACCAACGAGGAATGCCTAGTAAGCGGGAATCATTACTTCCCGCTGATT 2404 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2405 AAGTCCCTGCCCTTTGTA 2422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947008106752