Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq17938 282 8e-74 seq1822 187 5e-45 seq12515 179 7e-43 seq18566 95.1 2e-17 >seq17938 Length=2741 Score = 282 bits (312), Expect = 8e-74 Identities = 214/251 (85%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||||||||||||||||||||||||| |||| ||||| | Sbjct 1942 AGAGCATGTGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGAAA 1883 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||| | Sbjct 1882 AGCTTCGGGGAGCTGGCAAATTAGCTTTGATCCGGAGATATCCGAATGGGGAAACCCA-C 1824 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 |||| ||| || |||||||||||||||||| |||| | |||||| | |||||||||| Sbjct 1823 CCTTAGGGGTATCGCATGCTGAATACATAGGCATGCGAGGCGAACCGAGTGAACTGAAAC 1764 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1763 ATCTAAGTAACTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAAAT 1704 Query 241 GGGATGAGCCT 251 ||| |||||| Sbjct 1703 CGGAGGAGCCT 1693 >seq1822 Length=724184 Score = 187 bits (206), Expect = 5e-45 Identities = 240/323 (74%), Gaps = 16/323 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || | || |||||||||||||| | | |||||||||||||||| | || ||||||| Sbjct 158091 AGAGCGCTTGATGGATGCCTTGGCGTTAAGAGGCGATGAAGGACGTGGCAGGCTGCGATA 158032 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||||| ||| | | | |||| |||||||||||||||||||||||||||||||| | Sbjct 158031 AGCTGTGGGAAAT-TGTCAACAAGTTTTGATCCGCAGATTTCCGAATGGGGAAACCCAAC 157973 Query 121 --CCTTTG--GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTG 176 ||| | || ||| || |||| || |||| ||||| ||| || |||||| Sbjct 157972 TAGCTTAGCTAGTTATT--AT-----ATAC-TAAGTATATAAAGCAAACTTGGTGAACTG 157921 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 ||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||| Sbjct 157920 AAATATCTAAGTAGCCAAAGGAAAAGAAATCAACCGAGATTCTGTTAGTAGTGACGAGCG 157861 Query 237 AAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAG 296 ||| ||| || | |||| || ||| | | |||| |||||||||| | | Sbjct 157860 AAAGCGGAAAAGGC-CAACGATTTA--AAAATAAGAATTAGAATACTCTGGAAATGGTAA 157804 Query 297 CCATAGCGGGTGATAGCCCCGTA 319 |||||| |||||||| || ||| Sbjct 157803 CCATAGAAGGTGATAGTCCTGTA 157781 >seq12515 Length=3908 Score = 179 bits (198), Expect = 7e-43 Identities = 209/280 (75%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 42 GACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTT 101 ||||| |||| ||||||||||| ||||||| ||||| |||||||||| |||||| Sbjct 442 GACGTGATAGCCTGCGATAAGCTTCGGGGAGCTGGCAAATTAGCTTTGATCCGGAGATTT 383 Query 102 CCGAATGGGGAAACCCGGCCCTTTGGG--TCATTGCATGCTGAATACATAGGTATGCAAA 159 |||||||||||||||| || || | | | | |||||||||||||| Sbjct 382 CCGAATGGGGAAACCCACTCCGCAAGGAGTAACT-CTGACTGAATACATAGGTCATTGTG 324 Query 160 GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCC 219 |||||| || |||||||||||||| ||||||| ||||||||| ||||||||||||||| Sbjct 323 GCGAACCGGGTGAACTGAAACATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCC 264 Query 220 CAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAA 279 |||||||||||||||||||| ||| |||| | || ||| | | ||| ||| Sbjct 263 GAAAGTAGTGGCGAGCGAAATCGGAGTAGCCCTCGCGTTTTAGCAGTTTGCATATCAGAA 204 Query 280 TCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 |||||| |||| ||||||||||||||||||| Sbjct 203 CGGAATGGAAAGTCCGGCCACAGCGGGTGATAGCCCCGTA 164 >seq18566 Length=2075 Score = 95.1 bits (104), Expect = 2e-17 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 372 GCGAACTGAAACATCTTAGTAGCTAAAGGAAAATAAATCAACCGAGATTCCGTAAGTAGT 431 Query 229 GGCGAGCGAA 238 || ||||||| Sbjct 432 GGTGAGCGAA 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918213941344