Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq14106 318 2e-84 seq1822 286 1e-74 seq17938 159 1e-36 >seq14106 Length=4562 Score = 318 bits (352), Expect = 2e-84 Identities = 415/568 (73%), Gaps = 17/568 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||||||||||||| |||| ||| | |||||| | |||| || Sbjct 1988 TCGACTTGTTTGTCTCGCAGTCAAGCAACCTTATGCCTATGCACTCATTGCGCGATTTCC 1929 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| ||||||| ||||| | | |||||||||| ||||||||| | ||||||||| Sbjct 1928 GACCGCGCTGAGGTTACCTTCGCACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAG 1870 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATC-ATGGGCCAAGGTTAGATATCC- 178 | ||||||||||||| || |||||| ||| ||| | | | |||||||| ||| Sbjct 1869 TCAAACTACCCACCATACATTGTCCCTGACCGGGATATACCGATCGAGGTTAGAACTCCG 1810 Query 179 --ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 | ||| ||| |||||||||||| | ||||| | |||||||| | || Sbjct 1809 AAATTAC---CAGGGTGGTATTTCAAGGTTGGCTCCATCAGAACTAGCGTCCTGACTTCG 1753 Query 237 TAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG 296 | |||||||||||||||||||| | | || ||||| ||| | ||||||||| Sbjct 1752 ATGCCTCCCACCTATCCTACACAAGCAATTTCAAAGTCCAATGTAAAGTTGTAGTGAAGG 1693 Query 297 TCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | |||||||||| |||| ||||||| ||| ||||| | || | | ||||||| Sbjct 1692 TTCACGGGGTCTTTCCGTCTTGCCGCGGGAACACTGCATCGTCACAGCGATTTCAATTTC 1633 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 || | |||| | ||||||| ||| ||||||| |||||||||||||||||||||| Sbjct 1632 ACTGAGCCTCGGAAGGAGACAGTGGGGCTATCGTTACTCCATTCGTGCAGGTCGGAACTT 1573 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1572 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 1513 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| || | || | | | || ||| || | ||||||||||||| Sbjct 1512 CTTCGATCAAGAGCTTTGC------CTTG--CGGCTGACCCCATCAATTAACCTTCCAGC 1461 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||| |||| || ||||| || Sbjct 1460 ACCGGGCAGGAGTCACACCCTATACGTC 1433 >seq1822 Length=724184 Score = 286 bits (316), Expect = 1e-74 Identities = 399/560 (71%), Gaps = 21/560 (4%) Strand=Plus/Plus Query 5 CTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACC 64 ||||| || |||||||||| || ||| | | || ||| | | |||||| || ||| Sbjct 155863 CTTGTCAGCCTCGCAGTCAGGCAAGCTTATACCATTGTACTATCAAGCTGATTTCCGACC 155922 Query 65 AGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAA 124 || || ||||| | |||||||||||| |||| ||||| | ||||||||||| || Sbjct 155923 AGCTCTAGCTTACCTTCGCACGCCTCCGTTACTTTTTAGGAGG-CGACCGCCCCAGTCAA 155981 Query 125 ACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACG 184 ||||||||||| || ||||| |||||| ||| || |||||||||| | | | Sbjct 155982 ACTACCCACCATACAATGTCCTAGTTCCAGATAATGAAACATAGTTAGATATCAAAAATG 156041 Query 185 GTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 || ||||||| |||| ||||||| | |||||| | ||| ||||||| Sbjct 156042 TAAAGGGTGGTATCTCAAGGTTGACTCCATTATAGCTAGCGCTATAACTTCAAAGTCTCC 156101 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGG 303 |||||||||| |||| ||| |||| |||||||||| ||||| | |||| Sbjct 156102 CACCTATCCTGCACATTATATTTTTAATAGCAATGTAAAGCTATAGTAAAGGTGCACGGG 156161 Query 304 GTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCC 363 |||| |||||| ||||| | | | |||||| || | | | ||||||| | | Sbjct 156162 GTCTCTTCGTCTAACCGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGT 156221 Query 364 TGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 423 || | ||||||| | | | |||||||||||||||||| ||||||||||||||||||| Sbjct 156222 GATGTTGGAGACAGTGGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACA 156281 Query 424 AGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||||||||| || | ||||| |||||||||||||||||||||||| Sbjct 156282 AGGAATTTCGCTACCTTAGGACCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATT 156341 Query 484 ACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCA 543 | || ||| || |||| ||||||||||||||||||||| Sbjct 156342 TAGAG-CTTGCACCCC------------------TCCTATTAACCTTCCAGCACCGGGCA 156382 Query 544 GGCGTCAGTCCGTATACCTC 563 |||||||| || ||||| || Sbjct 156383 GGCGTCAGACCCTATACTTC 156402 >seq17938 Length=2741 Score = 159 bits (176), Expect = 1e-36 Identities = 142/179 (79%), Gaps = 19/179 (11%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 61 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| ||||||||||||||| ||||||| | | || ||| ||| Sbjct 62 CGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAG-CTTGCACCCCA----- 115 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||| |||| ||||||||||||||||||||||| || ||||| ||| Sbjct 116 -----TCA--------ATTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702055110784