Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4471 477 3e-132 seq1750 394 3e-107 seq496 307 3e-81 seq265 199 1e-48 seq852 84.2 7e-14 >seq4471 Length=24596 Score = 477 bits (528), Expect = 3e-132 Identities = 424/525 (81%), Gaps = 33/525 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | |||| ||| ||||| | || |||||||||||||||||| Sbjct 16788 GTTCTCATTCCAATTGCCAGACTTTAAAAAGCCCAGCATTGTTATTTATTGTCACTACCT 16729 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 16728 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 16669 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 16668 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAGCCATGGTA 16609 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || ||||||||| |||| |||||||||||||| |||||||| ||||| Sbjct 16608 GGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATGCATCGATTTTG 16549 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGG---GCGTT 297 ||| |||| || | ||||||||||||||||| || || | | || || Sbjct 16548 CAAT------CGATCCGAGA-GTTATTATGAATCACCA-GGTTCCGGGTTGCCCCGCATT 16497 Query 298 GGTTTTTTATCTAATAAATACACCCCTTC---CGAAGT---------------CGGGGTT 339 ||||| |||||||||||||||| |||| | | | ||| Sbjct 16496 GGTTTCC-ATCTAATAAATACACCTCTTCTATCATACTTTTACATATAATAAAAAAAGTT 16438 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || ||||||||||||||||||||||| ||||||||||| |||| || || ||||||| Sbjct 16437 TTATGCATGTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGCAA-AAACCATCAAAT 16379 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| ||||||||| ||||||||||||||||||||||| |||||| | | |||||||||| Sbjct 16378 AAACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTATAG-TCGTTTATACTTAG 16320 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 16319 ACATGCATGGCTTAATCTTTGAGACAAGCGTATG-CTACTGGCAG 16276 >seq1750 Length=152056 Score = 394 bits (436), Expect = 3e-107 Identities = 409/524 (78%), Gaps = 23/524 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 1170 GTTCTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 1111 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1051 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 1050 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTTACAACCATGGT 991 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||||||| |||||||| |||||| ||||||| || |||||||| Sbjct 990 AGGCGCAAAACCTACCATCGTCAGTTGATAAGGCAGACATTTGAAGGACATGTCGCCGGC 931 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA---GGA--GCCC---CG 288 | || || |||||| | | ||||| || ||||||| ||| | || || Sbjct 930 GCGGAGACCGTGCGATCAGCCCAAGGTTATCCAGAGTCACCAAAACGGAACGACCGGGCG 871 Query 289 AA--GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG----GTTTTT 342 || || || | | ||| |||||||||| | |||||| ||||| | | Sbjct 870 AACCGGCCGATTGGCTTTGATCTAATAAA-AGCGTCCTTCCCCTTTCGGGTCACGACTGA 812 Query 343 A--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 | |||||||||||||||||||||||||| |||||||| ||| || | || || Sbjct 811 AATGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA-AAATTTTGGGTCCAAGG 753 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||| ||||||||||||||||||| |||||||| || | | | || |||| || Sbjct 752 AACCATAACCGATTTAATGAGCCATTCGCGGTTTCACTCTACA-ACAGTTTGTACTGAGG 694 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 693 CATGCATGGCTTAATCTTTAAGACAAGCATATCACTACTGGCAG 650 >seq496 Length=526744 Score = 307 bits (340), Expect = 3e-81 Identities = 373/501 (74%), Gaps = 33/501 (7%) Strand=Plus/Minus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 ||| || ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 306360 GAGTCCCGTATCGTTATTTTTTGTCACTACCTCCCCGTGCCGGGAGTGGGTAATTTGCGT 306301 Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 ||||||| |||||||||||||||||||| || |||||||||||||||| ||||||||||| Sbjct 306300 GCCTGCTACCTTCCTTGGATGTGGTAGCAGTGTCTCAGGCTCCCTCTCAGGAATCGAACC 306241 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 || ||||||||||||||||| |||||||||| | | ||| |||||| ||||||| Sbjct 306240 CTGATTCCCCGTTACCCGTTACAACCATGGTAGACATAAAATCTATCATCGACAGTTGAT 306181 Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG-CCATGCGATTCGTTAAGTTATT 267 | | ||| ||||||| || || ||| | ||| || |||||| | | |||| Sbjct 306180 AAGTCAGTCATTTGAAAGACGAGCCGTCGGTACGAGGACCGTGCGATGTGGCATGTTACC 306121 Query 268 ATGAATCACCAAG-------GAGCCCCGAA-------GGGCGTTGGTTTTTTATCTAATA 313 | || || |||| || | || | | || | | || | |||||||| Sbjct 306120 AAGAGTCGTCAAGACACAGACAGACGCGGACGAGCCGGTCCGATTGGTTCTGATCTAATA 306061 Query 314 AA----TACACCCCTTCCGAAGTCGGG-GTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 || | | || || | |||| || | ||||||||||||| ||| ||||||| Sbjct 306060 AAAGCGTCCTTACCATCACTGGACGGGACTTGATTGCATGTATTAGCTGTAGGATTACCA 306001 Query 369 CGGTTATCCATGTAGTAAGGT--ACTA-TCAAATAAACGATAACTGATTTAATGAGCCAT 425 | |||||||| || |||| || | |||| | ||| |||||||||||||||||| | Sbjct 306000 CAGTTATCCA--CAG--AGGTGAACAACTCAACTGAACCATAACTGATTTAATGAGCTTT 305945 Query 426 TCGCAGTTTCACT--GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 ||| ||||||| | ||| |||| ||| |||| |||||||||||| |||||||| Sbjct 305944 CCGCGCTTTCACTTAATTTAGTTTGC----ACTGAGACTTGCATGGCTTAAGCTTTGAGA 305889 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 305888 CAAGCATATGACTACTGGCAG 305868 >seq265 Length=641558 Score = 199 bits (220), Expect = 1e-48 Identities = 263/363 (72%), Gaps = 39/363 (11%) Strand=Plus/Plus Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 |||||||||||||||||| |||||||||| || || |||||||| |||||||||||| Sbjct 450379 ATTCCCCGTTACCCGTTGCAACCATGGTAGTCCTAGATACTACCATCAAAAGTTGATAGG 450438 Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGA 271 ||||| ||||||| || | ||| ||| |||| |||| |||| | ||||||| || Sbjct 450439 GCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGATCAGC-AAGTTATCTAGA 450497 Query 272 ATC--ACCA-----AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT 324 | |||| | || | | || |||||||| |||||||| ||| | | Sbjct 450498 GTTCAACCATAATAACGATCTTGCGATCGC-TTGGTTTTAGC-CTAATAAAAGCACACGT 450555 Query 325 TCCGAAG-TCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 || ||| || | |||| || |||||||||||||||||||||||||| |||||||| || Sbjct 450556 CCCAAAGGTCCGTGTTTATATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGT 450615 Query 382 AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 | |||||| ||||||||| || || |||||||| | Sbjct 450616 A-------------------------ACTGATATAATGAGCCTTTTGCGGTTTCACTTT- 450649 Query 442 TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 || | | | |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 450650 TAATTCGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGG 450709 Query 502 CAG 504 ||| Sbjct 450710 CAG 450712 >seq852 Length=316941 Score = 84.2 bits (92), Expect = 7e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct 117281 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCATTACAACCATGGTAG 117223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510094008064