Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2633 113 4e-20 seq176 87.8 1e-12 >seq2633 Length=69334 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||||||||| ||||| || || ||||| || || |||||||| | | ||| Sbjct 13273 TTCAATGCCATTGAGACTCTAGATTGCGTTAAGCGCAAGGCAGATTGGGCTCTAGACTGG 13214 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 ||| ||| || ||||| || |||||| | | | |||||||| | || |||||| Sbjct 13213 ATCGGCAGCGATACAGCTACTTTCGGTGAAAGGGTCGTCGCATTTGCTGCTGTTGAGGGT 13154 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || || ||| || ||||| || || ||| | |||||||| || ||||||||| Sbjct 13153 ATTTTCTTTTCGGGAAGCTTCGCCGCTATTTTCTGGCTCAAGAAACGAGGTCTTATGCCC 13094 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||| |||| |||||||| ||| | || ||| | ||||||| Sbjct 13093 GGTTTGACTTTCAGCAACGAGCTTATTTCAAGGGACGAGG 13054 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| | || ||||| || |||||||| || ||||| ||||| || | | ||| | Sbjct 18662 CATGTTCTCGCTTTCTTCGCTGCTTCGGATGGAATCGTTAATGAAAACCTTGTAGAAAGG 18603 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || ||||| || || |||| ||| | |||||||| || || || || || ||| Sbjct 18602 TTCAGTCAAGAGGTTCAGGTTACGGAAGCGAGGTGTTTCTATGGATTTCAAATAGCTATG 18543 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || || |||||| | || || ||||| ||||| Sbjct 18542 GAGAATGTCCATTCCGAAATGTACTCGCTACTTATTGATACATACAT 18496 >seq176 Length=640401 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 ||||||||||| || ||| | || | || ||| || | ||| |||||||| || Sbjct 536987 TGTGGACACATAAGACTCCACTTTCCGTTCTTTTCCACTCTTTCCATGAATAGATCGGGA 537046 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 ||||| | |||||| || ||||| ||||| || || || | ||| || || | Sbjct 537047 ATCCACAAGGCGTAAAACAGATCTCGTGCCCGCACTTCTTCTTTACCGGTGTTCTTCTTC 537106 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| || || ||||| | ||| || ||||| || || |||||||||||||| Sbjct 537107 AAGTCAAGAAATTCAAATACGTCAGCGTGCCACGGCTCAAGGTAGATGGCGAA 537159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397469837851760