Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2313 111 5e-20 >seq2313 Length=433473 Score = 111 bits (122), Expect = 5e-20 Identities = 258/385 (67%), Gaps = 8/385 (2%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| ||||||| || ||| | || | || ||||||||| Sbjct 115858 AAATATCCAATAATTTCTATAGAAGATGCAATTAGTGAAGATGATTATGAAGGTTGGAAA 115917 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 | ||||||| | | || || || ||||||| || || || || || || || || Sbjct 115918 TTACTTACTGCAAAATTGGGAAGTGAAATTCAATTAGTCGGGGATGATTTATTTGTTACA 115977 Query 2638 AACACTG--CTTACCTTGAAAAAGGTATTGC--AGAACACGCTGCTAACTCAATCCTTAT 2693 || || || | | | ||||| || | |||| | | || || | | || || Sbjct 115978 AATTGTGAACTAA--TAAATAAAGGAATAGAGGAGAAAATG--GCAAATGCTGTACTAAT 116033 Query 2694 CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGA 2753 ||| || ||||| || || | || |||||||||| ||||| |||||||| ||| Sbjct 116034 CAAGCCAAATCAAATAGGAACGCTTACGGAAACTTTTGCTGCTATTGAAATGGCAAAATC 116093 Query 2754 AGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGC 2813 | ||| |||| || | | ||||| || ||||||||||| ||||| ||||||| | Sbjct 116094 AAATGGCTACAGGGCTATTATTTCACATCGCTCAGGTGAAACAGAAGACACAACAATATC 116153 Query 2814 TGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGA 2873 | || || ||||| | || ||| ||||| ||||| || || |||| ||| |||| Sbjct 116154 CCACATAGCGGTTGCGTCGAATTGTGGGCAAATAAAGACTGGCTCGCTGTCGCGTTCTGA 116213 Query 2874 CCGTATTGCTAAATACAACCAATTG 2898 | |||| || || || ||||| Sbjct 116214 TAGGCTTGCAAAGTATAATGAATTG 116238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156000860964396