Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq278 102 1e-19 seq52 89.7 8e-16 seq311 75.2 2e-11 seq75 73.4 6e-11 >seq278 Length=415998 Score = 102 bits (112), Expect = 1e-19 Identities = 169/233 (73%), Gaps = 17/233 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT-- 58 ||||| || ||||| ||||| |||| |||| || ||||||| ||||||| |||||| Sbjct 382522 GTACAGAGAGCAGGCACGTAATCAATGCGAA-TTAATGACTCATGCTTACTGGGAATTCA 382580 Query 59 -TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA---TTTCAA 114 ||| ||| | | || ||||||| | ||| | | || ||||| || ||| Sbjct 382581 TTCCAAGTTCATGTGAAAGG-TTGCAATTTACAATCTCAAGCA---TGAAAGCGTTGCAA 382636 Query 115 AGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGC 172 | |||||||||||| ||| | ||| |||| || ||||| ||| | || |||| || Sbjct 382637 CGGCTTACCCGGACCTTCCGGTCTAGGAGATACAC--GTTGA-TACTTTCATGGTAGAGC 382693 Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||| |||||| ||||||| ||| |||||||||||||||| ||| || || Sbjct 382694 GCGTGTAGCCCAGGACATCTAGCGGCCTCACAGACCTGTTATT-CCTGAATCT 382745 >seq52 Length=1191197 Score = 89.7 bits (98), Expect = 8e-16 Identities = 139/188 (74%), Gaps = 12/188 (6%) Strand=Plus/Minus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 ||||||||||| |||| ||||| || ||||||| | ||||| |||||| || ||| | Sbjct 55875 GCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACCGGGAATT-CCAAGTTCAT 55818 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAA-GATTACCCGGA 126 | | |||| || || | | ||||| | || || || | |||| | ||||||||| Sbjct 55817 G-CGAACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCTGTTTACCCGGA 55761 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGCCCAG 185 ||| |||| | ||| ||| || ||||| ||| | || ||||||||||| || |||||| Sbjct 55760 CCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGGGCAGCCCAG 55704 Query 186 AACATCTA 193 ||||||| Sbjct 55703 GACATCTA 55696 >seq311 Length=318471 Score = 75.2 bits (82), Expect = 2e-11 Identities = 54/61 (89%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 ||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||| | Sbjct 147965 TGTAGCGCGTGTGCAGCCCAGGGCATCTAAGAGCATCACAGACCTGTTATTG-CTCAATC 148023 Query 225 T 225 | Sbjct 148024 T 148024 >seq75 Length=981352 Score = 73.4 bits (80), Expect = 6e-11 Identities = 61/72 (85%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 147 ACTCGTTGA-ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 || |||||| || | ||| |||||||| ||||| |||||| || || |||||||||||| Sbjct 361697 ACGCGTTGATATTC-TCATTGTAGCGCACGTGCAGCCCAGGACGCCTCAGGGCATCACAG 361639 Query 206 ACCTGTTATTGC 217 |||||||||||| Sbjct 361638 ACCTGTTATTGC 361627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751983936575