Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq54 96.9 3e-18 seq135 86.0 6e-15 >seq54 Length=1154455 Score = 96.9 bits (106), Expect = 3e-18 Identities = 133/179 (74%), Gaps = 14/179 (8%) Strand=Plus/Plus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||||||| ||| | ||||||| |||||||||| | ||||||| ||||| ||||| Sbjct 88917 TGGATGCCTTGGCGTTAAGAGGCGATGAAGGACGTGGCAGGCTGCGATAAGCTGTGGGGA 88976 Query 70 -TTGGCACATACGAATT--GATCCGTAGATATCCGAATGGGGCAACCC-GATATATTGG- 124 ||| || || |||| |||||| |||| ||||||||||| ||||| | || || | Sbjct 88977 ATTGTCA---ACAAATTTTGATCCGCAGATTTCCGAATGGGGAAACCCAGCTAGCTTAGC 89033 Query 125 -AGATATATCATAACGCTAGG--CGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| |||| ||| | || | || ||| ||| ||||||||| ||||||||| Sbjct 89034 TAGTTATTACATA---CTAAGTATGTAAAGCAAACTTGGTGAACTGAAATATCTAAGTA 89089 >seq135 Length=742707 Score = 86.0 bits (94), Expect = 6e-15 Identities = 92/121 (76%), Gaps = 8/121 (7%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 || ||||||||||||| || ||||||| |||||||||| ||| ||||||||||| || Sbjct 574743 ACAGTGGATGCCTAGGTAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAAAAGCGTCG 574684 Query 66 GGGATTGGCACATACGAA-----TTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | | || ||||||| | | ||| ||||||||||||||| ||||||||| | Sbjct 574683 G---CTAGCTGATACGAAGCATTATTAACCGGCGATATCCGAATGGGGAAACCCGATACA 574627 Query 121 T 121 | Sbjct 574626 T 574626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476789815105