Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq204 237 3e-60
seq814 192 1e-46
seq984 168 1e-39
seq612 168 1e-39
seq174 161 2e-37
seq260 149 1e-33
seq40 143 5e-32
seq421 141 2e-31
seq670 132 8e-29
seq135 78.8 2e-12
seq54 78.8 2e-12
>seq204
Length=507960
Score = 237 bits (262), Expect = 3e-60
Identities = 172/198 (87%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||| ||||
Sbjct 60903 GTCATTAGTAGGGTAAAGCTAACCTGTCTCACGACGATCTAAACCCAGGTCACGTCCCCT 60962
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
| |||||||||||| |||||||| ||||| |||||| |||||||||||||||
Sbjct 60963 TACA-TGGGTGAACAATTCAACGCTTGATGAATTTTGCTTCAAACTGATAGGAAGAGCCG 61021
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||| |||||||||||||| ||||||||| ||| ||||||| ||||||||||| |||||
Sbjct 61022 GCATCAAAGGATCAAAAAGCGACGTCGCTACGAATGCTTGGCCGCCACAAGCCAATTATC 61081
Query 210 CCTGTGGTAACTTTTCTG 227
||||||||||||||||||
Sbjct 61082 CCTGTGGTAACTTTTCTG 61099
>seq814
Length=40536
Score = 192 bits (212), Expect = 1e-46
Identities = 156/188 (83%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 34237 CATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 34179
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| |||||||||||||||||| ||||| || ||| |||| ||||||||||||
Sbjct 34178 GCATCTGTGAACAATCCAACGCTTGGGGAATTTTGGTTCACAATGAAAGGAAGAGCCGA- 34120
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
||||||| ||||| |||||||||||| ||||||| | ||||||||| ||||| |
Sbjct 34119 ----AAGGATCGCAAAGCCTCGTCGCTATGAATGCTTGGCCGTCACAAGCCACTTATCTC 34064
Query 212 TGTGGTAA 219
|| |||||
Sbjct 34063 TGCGGTAA 34056
>seq984
Length=4229
Score = 168 bits (186), Expect = 1e-39
Identities = 151/188 (80%), Gaps = 5/188 (3%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 2189 CATTAGTAGGGTAAAACTAACTTGTCTCACGACAGTCTAAACCCAGCTCACGTTCCCTTG 2130
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| | |||| | |||| || ||||| || ||| ||||||||||||||||||
Sbjct 2129 CA-TCTGTGA----TGCAACATTTGGGGAATTTTGGTTCACAATGATAGGAAGAGCCGAC 2075
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| | |||||| ||||| |||||||||||| ||||||| | ||||||||| ||||| |
Sbjct 2074 ATGAAGGGATCACAAAGCGTCGTCGCTATGAATGCTTGGCCGTCACAAGCCACTTATCTC 2015
Query 212 TGTGGTAA 219
|| |||||
Sbjct 2014 TGCGGTAA 2007
>seq612
Length=100015
Score = 168 bits (186), Expect = 1e-39
Identities = 151/188 (80%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||| | |||||||||||||||||||| || ||| ||||||||||||||| |||||||| |
Sbjct 12149 CATTAATAGGGTAAAACTAACCTGTCCCACGACAGTCTAAACCCAGCTCGCGTTCCCT-T 12091
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| |||| |||| |||||||| ||||| || ||| |||||||||||||||||
Sbjct 12090 GCATCTGTGATCAATGCAACGCTTGGGGAATTTTGGTTCACAATGATAGGAAGAGCCGA- 12032
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
||||||| ||||| |||||||||||| |||||| | ||||||||| |||||||
Sbjct 12031 ----AAGGATCGCAAAGCGTCGTCGCTATGAATGCTTGGTCGTCACAAGCCACTTATCCC 11976
Query 212 TGTGGTAA 219
|| |||||
Sbjct 11975 TGCGGTAA 11968
>seq174
Length=596531
Score = 161 bits (178), Expect = 2e-37
Identities = 153/196 (78%), Gaps = 11/196 (6%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| |||||||||||||||| | || |||| ||||| | ||||| ||||||| |||
Sbjct 31662 GTCATTAGTAGGGTAAAACTAATCCGTTTCATAGTGGTCTGATCCCAGTTCACGTTTCCT 31721
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|| |||||| ||||||||||||| | ||| || || ||||||||||
Sbjct 31722 TGTA-TGGGTGGCCAATCCAACGCTTTGTGGATTTTGTTT----------GGAAGAGCCG 31770
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
||||| |||||||||||||| ||| | |||||||| || || |||||||| ||||||||
Sbjct 31771 ACATCAAAGGATCAAAAAGCGACGCCACTATGAACACTCGGTCGCCACAAGGCAGTTATC 31830
Query 210 CCTGTGGTAACTTTTC 225
||||||||| |||||
Sbjct 31831 TCTGTGGTAATTTTTC 31846
>seq260
Length=398794
Score = 149 bits (164), Expect = 1e-33
Identities = 134/169 (79%), Gaps = 11/169 (7%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 84584 GTCATTAGTAGGGTAAAACTAATCTGTTTCATGACGGTCTAAACCCAGCTCACGTTCACT 84525
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|| | |||||| ||||||| |||| | ||| |||||| || ||| ||||
Sbjct 84524 TGTA-TCGGTGAATAATCCAAAGCTTGGTGTATTTTGCTTCACAATAATAACAAGA---- 84470
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198
|||||||||||||| | | ||||||||||||||||| ||||||
Sbjct 84469 ------AAGGATCAAAAAGCTATGCCGCTATGAACGCTTGGCCGCCACA 84427
>seq40
Length=1503743
Score = 143 bits (158), Expect = 5e-32
Identities = 143/185 (77%), Gaps = 9/185 (5%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| |||||||| ||||||| |||||||||||| |||||||| || |||||||| ||
Sbjct 1389076 GTCATTAGTAGGGTGAAACTAATCTGTCTCATGACAGTCTAAACGCAACTCACGTTTACT 1389017
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|| | |||||| |||||||||||| | ||| |||| | || |||| ||| |||
Sbjct 1389016 TGTA-TCGGTGAATAATCCAACGCTTGGTGTATTTTGCTCCACAATTATAGCAAGGACCG 1388958
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
||||| ||| |||||||||| ||| ||||| |||| ||||||||||| ||||
Sbjct 1388957 ACATCAAAGAATCAAAAAGCTACGCCGCTA--------TGGCCGCCACAAGCCAATTATA 1388906
Query 210 CCTGT 214
| |||
Sbjct 1388905 CATGT 1388901
>seq421
Length=211488
Score = 141 bits (156), Expect = 2e-31
Identities = 142/183 (78%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||| |||||| || |||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 29820 CATTAGTAGGATAGAACTAACCTGTCCCACGACGGTCTAAACCCAGCTCACATTCCCTTG 29761
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| | | ||||||||||| | ||| |||| |||||| || ||| |||||| |||
Sbjct 29760 GATTTG-TGAACAATCCAGCACTTGGGAAATTTTGCTTCACAATCATAAAAAGAGCTGAC 29702
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| || ||| ||||| ||||||||||| |||||| | |||| ||||||||||||
Sbjct 29701 ATGAGAGAATCGCAAAGCGTCGTCGCTATGAGTTCTTGGCCGTCACAGGCCAGTTATCCC 29642
Query 212 TGT 214
||
Sbjct 29641 CGT 29639
>seq670
Length=79185
Score = 132 bits (146), Expect = 8e-29
Identities = 119/147 (81%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC-CCTA 90
||| |||||| |||||| || ||||| || ||||||||||||||||||||||||| |||
Sbjct 67730 CATTAGTAGGATAAAACAAATCTGTCCCACGACGGTCTAAACCCAGCTCACGTTCTCCTG 67789
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|| ||||||||| ||||||| ||||| |||||| |||||||||||||||||
Sbjct 67790 CACCTG--TGAACAATCTAACGCTTGGGGAATTTTGCTTCACAATGATAGGAAGAGCCGA 67847
Query 151 CATCGAAGGATCAAAAAGCAACGTCGC 177
||| ||||||| |||||| || |||
Sbjct 67848 CATGAAAGGATCGAAAAGCGTCGCCGC 67874
>seq135
Length=742707
Score = 78.8 bits (86), Expect = 2e-12
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 572155 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 572214
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | ||| || | | ||| || ||||||||||||| | |||| | |
Sbjct 572215 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 572271
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 572272 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 572326
>seq54
Length=1154455
Score = 78.8 bits (86), Expect = 2e-12
Identities = 128/183 (70%), Gaps = 6/183 (3%)
Strand=Plus/Minus
Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104
|||| | |||||||| |||| |||||||||| ||||||| || ||| | || |||||
Sbjct 91382 AAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGCGAACA 91323
Query 105 ATCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161
| ||| ||| ||| ||| || | | ||| || ||| ||||||||| |
Sbjct 91322 GCCGAACCCTTGGGACCTTCTTCAGCCCCAGGATGT---GATGAGTCGACATCGAGGTGC 91266
Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
|||| | |||||||||||||||| | ||| |||| |||||||| | ||| ||
Sbjct 91265 CAAACGGTGTCGTCGCTATGAACGCTCGAACACCATCAGCCTGTTATCCCCGGCGTACCT 91206
Query 222 TTT 224
|||
Sbjct 91205 TTT 91203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854381160480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |