Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq204 237 3e-60 seq814 192 1e-46 seq984 168 1e-39 seq612 168 1e-39 seq174 161 2e-37 seq260 149 1e-33 seq40 143 5e-32 seq421 141 2e-31 seq670 132 8e-29 seq135 78.8 2e-12 seq54 78.8 2e-12 >seq204 Length=507960 Score = 237 bits (262), Expect = 3e-60 Identities = 172/198 (87%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||| |||| Sbjct 60903 GTCATTAGTAGGGTAAAGCTAACCTGTCTCACGACGATCTAAACCCAGGTCACGTCCCCT 60962 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||||||| |||||||| ||||| |||||| ||||||||||||||| Sbjct 60963 TACA-TGGGTGAACAATTCAACGCTTGATGAATTTTGCTTCAAACTGATAGGAAGAGCCG 61021 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| |||||||||||||| ||||||||| ||| ||||||| ||||||||||| ||||| Sbjct 61022 GCATCAAAGGATCAAAAAGCGACGTCGCTACGAATGCTTGGCCGCCACAAGCCAATTATC 61081 Query 210 CCTGTGGTAACTTTTCTG 227 |||||||||||||||||| Sbjct 61082 CCTGTGGTAACTTTTCTG 61099 >seq814 Length=40536 Score = 192 bits (212), Expect = 1e-46 Identities = 156/188 (83%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 34237 CATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 34179 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | |||||||||||||||||| ||||| || ||| |||| |||||||||||| Sbjct 34178 GCATCTGTGAACAATCCAACGCTTGGGGAATTTTGGTTCACAATGAAAGGAAGAGCCGA- 34120 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||| ||||| |||||||||||| ||||||| | ||||||||| ||||| | Sbjct 34119 ----AAGGATCGCAAAGCCTCGTCGCTATGAATGCTTGGCCGTCACAAGCCACTTATCTC 34064 Query 212 TGTGGTAA 219 || ||||| Sbjct 34063 TGCGGTAA 34056 >seq984 Length=4229 Score = 168 bits (186), Expect = 1e-39 Identities = 151/188 (80%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 2189 CATTAGTAGGGTAAAACTAACTTGTCTCACGACAGTCTAAACCCAGCTCACGTTCCCTTG 2130 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | | |||| | |||| || ||||| || ||| |||||||||||||||||| Sbjct 2129 CA-TCTGTGA----TGCAACATTTGGGGAATTTTGGTTCACAATGATAGGAAGAGCCGAC 2075 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || | |||||| ||||| |||||||||||| ||||||| | ||||||||| ||||| | Sbjct 2074 ATGAAGGGATCACAAAGCGTCGTCGCTATGAATGCTTGGCCGTCACAAGCCACTTATCTC 2015 Query 212 TGTGGTAA 219 || ||||| Sbjct 2014 TGCGGTAA 2007 >seq612 Length=100015 Score = 168 bits (186), Expect = 1e-39 Identities = 151/188 (80%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| | |||||||||||||||||||| || ||| ||||||||||||||| |||||||| | Sbjct 12149 CATTAATAGGGTAAAACTAACCTGTCCCACGACAGTCTAAACCCAGCTCGCGTTCCCT-T 12091 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | |||| |||| |||||||| ||||| || ||| ||||||||||||||||| Sbjct 12090 GCATCTGTGATCAATGCAACGCTTGGGGAATTTTGGTTCACAATGATAGGAAGAGCCGA- 12032 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||| ||||| |||||||||||| |||||| | ||||||||| ||||||| Sbjct 12031 ----AAGGATCGCAAAGCGTCGTCGCTATGAATGCTTGGTCGTCACAAGCCACTTATCCC 11976 Query 212 TGTGGTAA 219 || ||||| Sbjct 11975 TGCGGTAA 11968 >seq174 Length=596531 Score = 161 bits (178), Expect = 2e-37 Identities = 153/196 (78%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||||||||||||| | || |||| ||||| | ||||| ||||||| ||| Sbjct 31662 GTCATTAGTAGGGTAAAACTAATCCGTTTCATAGTGGTCTGATCCCAGTTCACGTTTCCT 31721 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || |||||| ||||||||||||| | ||| || || |||||||||| Sbjct 31722 TGTA-TGGGTGGCCAATCCAACGCTTTGTGGATTTTGTTT----------GGAAGAGCCG 31770 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||||||||||||| ||| | |||||||| || || |||||||| |||||||| Sbjct 31771 ACATCAAAGGATCAAAAAGCGACGCCACTATGAACACTCGGTCGCCACAAGGCAGTTATC 31830 Query 210 CCTGTGGTAACTTTTC 225 ||||||||| ||||| Sbjct 31831 TCTGTGGTAATTTTTC 31846 >seq260 Length=398794 Score = 149 bits (164), Expect = 1e-33 Identities = 134/169 (79%), Gaps = 11/169 (7%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| || Sbjct 84584 GTCATTAGTAGGGTAAAACTAATCTGTTTCATGACGGTCTAAACCCAGCTCACGTTCACT 84525 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || | |||||| ||||||| |||| | ||| |||||| || ||| |||| Sbjct 84524 TGTA-TCGGTGAATAATCCAAAGCTTGGTGTATTTTGCTTCACAATAATAACAAGA---- 84470 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||||||||||| | | ||||||||||||||||| |||||| Sbjct 84469 ------AAGGATCAAAAAGCTATGCCGCTATGAACGCTTGGCCGCCACA 84427 >seq40 Length=1503743 Score = 143 bits (158), Expect = 5e-32 Identities = 143/185 (77%), Gaps = 9/185 (5%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||||| ||||||| |||||||||||| |||||||| || |||||||| || Sbjct 1389076 GTCATTAGTAGGGTGAAACTAATCTGTCTCATGACAGTCTAAACGCAACTCACGTTTACT 1389017 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || | |||||| |||||||||||| | ||| |||| | || |||| ||| ||| Sbjct 1389016 TGTA-TCGGTGAATAATCCAACGCTTGGTGTATTTTGCTCCACAATTATAGCAAGGACCG 1388958 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| ||| |||||||||| ||| ||||| |||| ||||||||||| |||| Sbjct 1388957 ACATCAAAGAATCAAAAAGCTACGCCGCTA--------TGGCCGCCACAAGCCAATTATA 1388906 Query 210 CCTGT 214 | ||| Sbjct 1388905 CATGT 1388901 >seq421 Length=211488 Score = 141 bits (156), Expect = 2e-31 Identities = 142/183 (78%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| |||||| || |||||||||||| || ||||||||||||||||||||| |||||| Sbjct 29820 CATTAGTAGGATAGAACTAACCTGTCCCACGACGGTCTAAACCCAGCTCACATTCCCTTG 29761 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | | | ||||||||||| | ||| |||| |||||| || ||| |||||| ||| Sbjct 29760 GATTTG-TGAACAATCCAGCACTTGGGAAATTTTGCTTCACAATCATAAAAAGAGCTGAC 29702 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || || ||| ||||| ||||||||||| |||||| | |||| |||||||||||| Sbjct 29701 ATGAGAGAATCGCAAAGCGTCGTCGCTATGAGTTCTTGGCCGTCACAGGCCAGTTATCCC 29642 Query 212 TGT 214 || Sbjct 29641 CGT 29639 >seq670 Length=79185 Score = 132 bits (146), Expect = 8e-29 Identities = 119/147 (81%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC-CCTA 90 ||| |||||| |||||| || ||||| || ||||||||||||||||||||||||| ||| Sbjct 67730 CATTAGTAGGATAAAACAAATCTGTCCCACGACGGTCTAAACCCAGCTCACGTTCTCCTG 67789 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || ||||||||| ||||||| ||||| |||||| ||||||||||||||||| Sbjct 67790 CACCTG--TGAACAATCTAACGCTTGGGGAATTTTGCTTCACAATGATAGGAAGAGCCGA 67847 Query 151 CATCGAAGGATCAAAAAGCAACGTCGC 177 ||| ||||||| |||||| || ||| Sbjct 67848 CATGAAAGGATCGAAAAGCGTCGCCGC 67874 >seq135 Length=742707 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 572155 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 572214 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 572215 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 572271 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 572272 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 572326 >seq54 Length=1154455 Score = 78.8 bits (86), Expect = 2e-12 Identities = 128/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||| | |||||||| |||| |||||||||| ||||||| || ||| | || ||||| Sbjct 91382 AAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGCGAACA 91323 Query 105 ATCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 | ||| ||| ||| ||| || | | ||| || ||| ||||||||| | Sbjct 91322 GCCGAACCCTTGGGACCTTCTTCAGCCCCAGGATGT---GATGAGTCGACATCGAGGTGC 91266 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||| | |||||||||||||||| | ||| |||| |||||||| | ||| || Sbjct 91265 CAAACGGTGTCGTCGCTATGAACGCTCGAACACCATCAGCCTGTTATCCCCGGCGTACCT 91206 Query 222 TTT 224 ||| Sbjct 91205 TTT 91203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854381160480