Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq54 361 2e-97 seq135 338 2e-90 >seq54 Length=1154455 Score = 361 bits (400), Expect = 2e-97 Identities = 418/553 (76%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGC 110 || ||||||||||| ||| ||||| |||||| ||| |||||||| | ||||||||| Sbjct 89807 GGTATTCGGAGTTTAGTTAGATTT-GGTAAGACGGTGAATCCCCCTAGTCTATCCAGTGC 89749 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| || || | ||| | ||||| |||||||| |||||| |||||||||||| Sbjct 89748 TCTACCCCCAACAACATACATACAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCT 89689 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 || | ||||||||||||||||||||||||| |||| |||||| | | || |||| Sbjct 89688 ATTTCCAAGTTTGATTGGCCTTTCACCCCTAATCACAACTCATCCAATAATGTTGCAACA 89629 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | | |||||| ||||||| || ||||| |||||| ||| |||| |||||| Sbjct 89628 TTAACTGGTTCGATCCTCCAGTGTGTTTTACCACACCTTCAATCTGGTCATGACTAGATC 89569 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 |||| | ||||||||| | | ||| | ||||||||||| |||| ||||||||||| Sbjct 89568 ACTTGGTTTCGGGTCTAATCCATAAAACTAA-ACGCCCTATTCAGACTTGCTTTCGCTAC 89510 Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 | |||| || |||| |||| || || || | || ||||| | | |||| | |||| Sbjct 89509 GCCTACACCTAACGGCTTAAGCTTGCTTCATAGATTAA-CTCGCTGACCCATTATGCAAA 89451 Query 411 AGGCACGCCGTCAC-CTGG-TACC--TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||| |||| ||||| || || | |||| | | |||||| || | ||||| ||| Sbjct 89450 AGGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCA 89391 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | || |||||| | |||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 89390 CTTGATTTCAGATTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGT 89331 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 |||||| | ||||||||| ||||||||||||||||| || ||||||| ||| |||| Sbjct 89330 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 89271 Query 587 ACACGAAATTTCA 599 | || |||||| Sbjct 89270 AAACAGGATTTCA 89258 >seq135 Length=742707 Score = 338 bits (374), Expect = 2e-90 Identities = 388/514 (75%), Gaps = 17/514 (3%) Strand=Plus/Plus Query 89 GGCCCCCTAGACCATCCAGTGCTCTACCTCCG-GGAAGAA-ACACGCGACGCTGCACCTA 146 || ||||||| | | |||||||||||| ||| || ||| |||| | |||| ||||| Sbjct 573878 GGACCCCTAGCCGAAACAGTGCTCTACCCCCGAAGATGAATTCACGAGGCGCT--ACCTA 573935 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| ||||| ||||||||||||||| | ||||||||||||||||||||| | |||| Sbjct 573936 AATAGCTTTCGAGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCAC 573995 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 | ||||||| || | |||||||| | ||| |||||||||||||| || |||||| Sbjct 573996 AAGTCATCCGCTAATTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAAC 574055 Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGC 326 ||||||||||||||||| |||||||| | ||||||||| ||| ||| ||| | |||| Sbjct 574056 CTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATATCTTGCAACTTA-ACGC 574114 Query 327 CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGC 386 || || |||||| |||| |||||||| || | |||||||| || ||| || Sbjct 574115 CCAGTTAAGACTCGGTTTCCCTACGGCTCCCTTATTACAGTTAACCTTGCTACA-AAATA 574173 Query 387 AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCA 446 || |||| | | |||| | ||||||| |||| ||||| ||| |||| Sbjct 574174 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-----ACCCCGAAGG-----AT 574223 Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTAC 505 ||| | || | ||||| | ||| |||||||||| |||||||||||||| | | ||||| | Sbjct 574224 GCTTCCACTGCTTGTACGTACACGGTTTCAGGTTCTATTTCACTCCCCTCGCCGGGGTTC 574283 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||| |||||||||||||||||| || | |||||||||| |||||||||||| ||| Sbjct 574284 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 574343 Query 566 ACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||||||| ||| |||| || | || ||| Sbjct 574344 GAGGATGGTCCCCCCATCTTCAAACAAGATATCA 574377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817559921920