Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq54 361 2e-97
seq135 338 2e-90
>seq54
Length=1154455
Score = 361 bits (400), Expect = 2e-97
Identities = 418/553 (76%), Gaps = 9/553 (2%)
Strand=Plus/Minus
Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGC 110
|| ||||||||||| ||| ||||| |||||| ||| |||||||| | |||||||||
Sbjct 89807 GGTATTCGGAGTTTAGTTAGATTT-GGTAAGACGGTGAATCCCCCTAGTCTATCCAGTGC 89749
Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170
|||||| || || | ||| | ||||| |||||||| |||||| ||||||||||||
Sbjct 89748 TCTACCCCCAACAACATACATACAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCT 89689
Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230
|| | ||||||||||||||||||||||||| |||| |||||| | | || ||||
Sbjct 89688 ATTTCCAAGTTTGATTGGCCTTTCACCCCTAATCACAACTCATCCAATAATGTTGCAACA 89629
Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290
| | |||||| ||||||| || ||||| |||||| ||| |||| ||||||
Sbjct 89628 TTAACTGGTTCGATCCTCCAGTGTGTTTTACCACACCTTCAATCTGGTCATGACTAGATC 89569
Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350
|||| | ||||||||| | | ||| | ||||||||||| |||| |||||||||||
Sbjct 89568 ACTTGGTTTCGGGTCTAATCCATAAAACTAA-ACGCCCTATTCAGACTTGCTTTCGCTAC 89510
Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410
| |||| || |||| |||| || || || | || ||||| | | |||| | ||||
Sbjct 89509 GCCTACACCTAACGGCTTAAGCTTGCTTCATAGATTAA-CTCGCTGACCCATTATGCAAA 89451
Query 411 AGGCACGCCGTCAC-CTGG-TACC--TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466
||| |||| ||||| || || | |||| | | |||||| || | ||||| |||
Sbjct 89450 AGGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCA 89391
Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526
| || |||||| | |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 89390 CTTGATTTCAGATTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGT 89331
Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586
|||||| | ||||||||| ||||||||||||||||| || ||||||| ||| ||||
Sbjct 89330 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 89271
Query 587 ACACGAAATTTCA 599
| || ||||||
Sbjct 89270 AAACAGGATTTCA 89258
>seq135
Length=742707
Score = 338 bits (374), Expect = 2e-90
Identities = 388/514 (75%), Gaps = 17/514 (3%)
Strand=Plus/Plus
Query 89 GGCCCCCTAGACCATCCAGTGCTCTACCTCCG-GGAAGAA-ACACGCGACGCTGCACCTA 146
|| ||||||| | | |||||||||||| ||| || ||| |||| | |||| |||||
Sbjct 573878 GGACCCCTAGCCGAAACAGTGCTCTACCCCCGAAGATGAATTCACGAGGCGCT--ACCTA 573935
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| ||||| ||||||||||||||| | ||||||||||||||||||||| | ||||
Sbjct 573936 AATAGCTTTCGAGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCAC 573995
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266
| ||||||| || | |||||||| | ||| |||||||||||||| || ||||||
Sbjct 573996 AAGTCATCCGCTAATTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAAC 574055
Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGC 326
||||||||||||||||| |||||||| | ||||||||| ||| ||| ||| | ||||
Sbjct 574056 CTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATATCTTGCAACTTA-ACGC 574114
Query 327 CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGC 386
|| || |||||| |||| |||||||| || | |||||||| || ||| ||
Sbjct 574115 CCAGTTAAGACTCGGTTTCCCTACGGCTCCCTTATTACAGTTAACCTTGCTACA-AAATA 574173
Query 387 AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCA 446
|| |||| | | |||| | ||||||| |||| ||||| ||| ||||
Sbjct 574174 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-----ACCCCGAAGG-----AT 574223
Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTAC 505
||| | || | ||||| | ||| |||||||||| |||||||||||||| | | ||||| |
Sbjct 574224 GCTTCCACTGCTTGTACGTACACGGTTTCAGGTTCTATTTCACTCCCCTCGCCGGGGTTC 574283
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||| |||||||||||||||||| || | |||||||||| |||||||||||| |||
Sbjct 574284 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 574343
Query 566 ACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| ||||||| ||| |||| || | || |||
Sbjct 574344 GAGGATGGTCCCCCCATCTTCAAACAAGATATCA 574377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817559921920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |