Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq135 437 2e-120 seq54 273 5e-71 >seq135 Length=742707 Score = 437 bits (484), Expect = 2e-120 Identities = 352/412 (85%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 573992 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 574048 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| || || Sbjct 574049 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATATCTT-GC 574104 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATT-CGGTTAAGCTTT 187 ||| |||||| ||||||||| ||| | ||||| ||||| |||| | ||||| ||| Sbjct 574105 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTACGGCTCCCTTATTACAGTTAACCTT- 574162 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 || || || ||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct 574163 GCTACAAAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCCCGAAGGA 574222 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||| |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| Sbjct 574223 TGCTTCCACTGCTTGTACGTACACGGTTTCAGGTTCTATTTCACTCCCCTCGCCGGGGTT 574282 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 574283 CTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTT 574342 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||| |||| |||| | || |||| ||| ||||| Sbjct 574343 GGAGGATGGTCCCCCCATCTTCAAACAAGATATCACGTGTCTCGTTTTACTC 574394 >seq54 Length=1154455 Score = 273 bits (302), Expect = 5e-71 Identities = 301/390 (77%), Gaps = 23/390 (6%) Strand=Plus/Minus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 |||||| ||||||||| || ||||| ||||| ||| ||| ||| | |||||| | Sbjct 89622 GGTTCGATCCTCCAGTGTGTT-TTACCACACCTT-CAATCTGGTCAT-GACTAGATCACT 89566 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164 ||||| |||||||| | | | |||| |||||||| | ||||| ||||| ||||||| Sbjct 89565 TGGTTT-CGGGTCTAATCCATAAA-ACTAAACGCCCTATTCAGACTTGCTTT-CGCTACG 89509 Query 165 CCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAA 223 ||| | |||| | |||||||| || | | | ||| ||||||||||||||| ||||| Sbjct 89508 CCTACACCTAACGGCTTAAGCTT-GCTTCATAGATTAACTCGCTGACCCATTATGCAAAA 89450 Query 224 GGTACGCAGTCACCC--------AACAAAGTGG------GCTCCCACTGCTTGTACGCAT 269 ||||||| ||||| | || ||| || ||||| |||| ||||| ||| Sbjct 89449 GGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCAC 89390 Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 89389 TTGATTTCAGATTCTATTTCACTCCCCTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGT 89331 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389 ||| |||||||||||||| | || ||||||||| ||||||||||||||||||||||||| Sbjct 89330 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 89271 Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||| |||| ||||| ||| |||||| Sbjct 89270 AAACAGGATTTCACGTGCCCCGCTCTACTC 89241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241572622720