Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq135 437 2e-120
seq54 273 5e-71
>seq135
Length=742707
Score = 437 bits (484), Expect = 2e-120
Identities = 352/412 (85%), Gaps = 10/412 (2%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 573992 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 574048
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||||||| |||||||||||| || |||||| || ||||| ||||||||| || ||
Sbjct 574049 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATATCTT-GC 574104
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATT-CGGTTAAGCTTT 187
||| |||||| ||||||||| ||| | ||||| ||||| |||| | ||||| |||
Sbjct 574105 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTACGGCTCCCTTATTACAGTTAACCTT- 574162
Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247
|| || || ||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 574163 GCTACAAAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCCCGAAGGA 574222
Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307
||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||
Sbjct 574223 TGCTTCCACTGCTTGTACGTACACGGTTTCAGGTTCTATTTCACTCCCCTCGCCGGGGTT 574282
Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 574283 CTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTT 574342
Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|||||||||||||||||| |||| |||| | || |||| ||| |||||
Sbjct 574343 GGAGGATGGTCCCCCCATCTTCAAACAAGATATCACGTGTCTCGTTTTACTC 574394
>seq54
Length=1154455
Score = 273 bits (302), Expect = 5e-71
Identities = 301/390 (77%), Gaps = 23/390 (6%)
Strand=Plus/Minus
Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104
|||||| ||||||||| || ||||| ||||| ||| ||| ||| | |||||| |
Sbjct 89622 GGTTCGATCCTCCAGTGTGTT-TTACCACACCTT-CAATCTGGTCAT-GACTAGATCACT 89566
Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164
||||| |||||||| | | | |||| |||||||| | ||||| ||||| |||||||
Sbjct 89565 TGGTTT-CGGGTCTAATCCATAAA-ACTAAACGCCCTATTCAGACTTGCTTT-CGCTACG 89509
Query 165 CCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAA 223
||| | |||| | |||||||| || | | | ||| ||||||||||||||| |||||
Sbjct 89508 CCTACACCTAACGGCTTAAGCTT-GCTTCATAGATTAACTCGCTGACCCATTATGCAAAA 89450
Query 224 GGTACGCAGTCACCC--------AACAAAGTGG------GCTCCCACTGCTTGTACGCAT 269
||||||| ||||| | || ||| || ||||| |||| ||||| |||
Sbjct 89449 GGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCAC 89390
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 89389 TTGATTTCAGATTCTATTTCACTCCCCTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGT 89331
Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389
||| |||||||||||||| | || ||||||||| |||||||||||||||||||||||||
Sbjct 89330 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 89271
Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
| ||| |||| ||||| ||| ||||||
Sbjct 89270 AAACAGGATTTCACGTGCCCCGCTCTACTC 89241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241572622720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |