Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq135 192 1e-46 seq54 159 8e-37 >seq135 Length=742707 Score = 192 bits (212), Expect = 1e-46 Identities = 294/408 (72%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 ||||||||||| |||||||||||||||| ||||| |||| | || ||| |||| Sbjct 573387 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTTACCCTGCTTCGATTAACGTTGAA 573446 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||| | | |||||| | || || |||| | | || |||| ||| | Sbjct 573447 CA-GGAATCCTTAGTTTTTCGGCGAGCAGGTTTTTCACCTGCTTTATCGTTACTTATGTC 573505 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| | | | || | |||| | || ||| Sbjct 573506 AGCATTCGCACTTCTGAT-ACCTCCAATATATTTT-ACAATATATCTTCTCAGGCTTACA 573563 Query 177 CGACGCTCCCCTACCCAACCA---CACAGGT--TGCCACAGCTTCGGCGGATAACTTAAG 231 ||||||| |||||||| | || | | |||| ||||||||| | |||| || || Sbjct 573564 GAACGCTCCTCTACCCAATAATTTCAAAATTATTGCCGCAGCTTCGGTGCATAATTTGAG 573623 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| |||||| | |||| | | ||| ||||||||||||||||||| ||||| || Sbjct 573624 CCCCGTTACATTTTTCGCGCAGGTTGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAT 573683 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 573684 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTT 573743 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 | | | |||| ||| ||||||| || | |||||| ||||||||| || Sbjct 573744 AATTATGACTTGGGGACCTTAGCCGACGGTCTGGGTTGTTTCCCTTTC 573791 >seq54 Length=1154455 Score = 159 bits (176), Expect = 8e-37 Identities = 290/420 (69%), Gaps = 22/420 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGT-CGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGAC 59 ||||||| ||| | ||| |||||||||||| |||||| |||| ||||| ||||| || Sbjct 90274 CGACTACTCCTTTACGGACTCGCCTTAGGAACCGACTAACCCTACGCAGATTAACTTAAC 90215 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 ||||||||| ||| | || | | | || ||| | | |||||||| ||| | Sbjct 90214 GTAGGAACCCTTAGATTTTTGGTGAGAGTGTTTTTCACACTCTTTTACGCTACTTATGTC 90155 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 ||||||||||| | | ||||| || |||| || |||||| ||| || Sbjct 90154 AGCATTCTCACTTCCGATATCTCCAGCAGTTT-TCACAAACCACCTTCACAGACTTACGG 90096 Query 178 GACGCTCCCCTACCCAACC----------ACACAGGTTGC---CACAGCTTCGGCGGATA 224 ||||||| ||||| || | || || |||| |||||| | | Sbjct 90095 AACGCTCCGCTACCGCGCCTATTGATCGAAATCAATAAGCACTCACATCTTCGGTATACA 90036 Query 225 ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACG 279 |||| ||||||| |||||| ||||||| ||| |||| ||| |||||||| ||||| Sbjct 90035 ACTTTAGCCCCGGTACATTTTCGGCGCAGAAAAACTTATTTAGACAAGTGAGCTGTTACG 89976 Query 280 CACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACAT 339 | ||||| ||||||||||||||||||||||||||||| | ||| | || || | Sbjct 89975 CTTTCTTTAAAGGATGGCTGCTTCCAAGCCAACCTCCTAGCTGTAATGGTTTTTCTACTT 89916 Query 340 CCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 |||| |||||| || | || ||| |||||| | ||||||||| ||||||||| || Sbjct 89915 CCTTCCCCACTTAGCTGTAATTTTGGGACCTTAGATAGTGATCTGGGTTGTTTCCCTTTC 89856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177574033920