Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq278 114 2e-23 seq52 95.1 2e-17 seq311 75.2 2e-11 seq1502 73.4 7e-11 seq298 73.4 7e-11 >seq278 Length=415998 Score = 114 bits (126), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || || ||| |||||||||||||||| ||| ||||||| |||||| ||||||| |||| Sbjct 382745 AGATTCAGG-AATAACAGGTCTGTGAGGCCGCTAGATGTCCTGGGCTACACGCGCTCTAC 382687 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| || ||||| || ||| ||| | |||||||||| |||||| | | ||| Sbjct 382686 CATGAAAGTATCAACGTGT--ATCTCCTAGACCGGAAGGTCCGGGTAAGCCGTTGCAACG 382629 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATG----CCTAG 281 || || |||| | ||| | ||||||| || | | | ||| |||||| || || Sbjct 382628 CTTTCATGCTTGAGATTGTAAATTGCAA-CCTTTCACATGAACTTGGAATGAATTCCCAG 382570 Query 282 TAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | ||||| | ||| |||||||||| ||||| || |||| Sbjct 382569 TAAGCATGAGTCATTAATTCGCATTGATTACGTGCCTGCTCTCTGTA 382523 >seq52 Length=1191197 Score = 95.1 bits (104), Expect = 2e-17 Identities = 132/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| |||||| || ||||||||||| ||| || ||||| || || ||| | | Sbjct 55696 TAGATGTCCTGGGCTGCCCGCGCGCTACAATGAAAGTATCAACGTGT--ATTTCCTAGAC 55753 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || ||||| |||||| | | || | || || |||| ||||| | | | || || | | Sbjct 55754 CGAGAGGTCCGGGTAAACAGCTGAACCACTTTCATGCTTGGGATTGTGAACTGAAACTGT 55813 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 | | | | ||| ||||| || ||||| | | ||||| | | ||| ||||||||||||| Sbjct 55814 T-CGCATGAACTTGGAATTCCCGGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCC 55872 Query 318 TGC 320 ||| Sbjct 55873 TGC 55875 >seq311 Length=318471 Score = 75.2 bits (82), Expect = 2e-11 Identities = 54/61 (89%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||| |||||||| |||||| |||| |||||||| Sbjct 148024 AGATTGAG-CAATAACAGGTCTGTGATGCTCTTAGATGCCCTGGGCTGCACACGCGCTAC 147966 Query 166 A 166 | Sbjct 147965 A 147965 >seq1502 Length=4680 Score = 73.4 bits (80), Expect = 7e-11 Identities = 93/127 (73%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||||| |||||| | | || | || || |||| ||||| | | | || || | || | Sbjct 1186 AGGTCCGGGTAAACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CA 1128 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 | | ||| ||||| || |||||| | | ||||| | | ||| |||||||||||||||| Sbjct 1127 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCT 1068 Query 322 CTTTGTA 328 ||||||| Sbjct 1067 CTTTGTA 1061 >seq298 Length=343991 Score = 73.4 bits (80), Expect = 7e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||||| ||||||||| |||||||| |||||| |||||| ||||| | ||| || Sbjct 109688 GCAATAACAGGTTTGTGATGCCATTAGATGTCCTGGGCTGCACGCACGCTAAAATGAAAG 109747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947179114240