Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq66 188 2e-45 seq2 129 2e-27 seq175 86.0 2e-14 >seq66 Length=1145271 Score = 188 bits (208), Expect = 2e-45 Identities = 305/427 (71%), Gaps = 20/427 (5%) Strand=Plus/Plus Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 |||||||||||||| |||||||| ||||||||||||||||||||| || ||||||||||| Sbjct 556945 CTGCTGCCTTCCTTCGATGTGGTTGCCGTTTCTCAGGCTCCCTCTTCGAAATCGAACCCT 557004 Query 151 AATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAG 210 |||| |||||||||| ||| |||||| || || | |||||| ||| || |||| Sbjct 557005 GATTCTTTTTTACCCGTTGCAACCGTGGTAGTCCTAAATACGACCATCAAAACTTAATAG 557064 Query 211 GGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATG 270 || || ||||||| || || | || ||| ||| ||| || |||||| || | Sbjct 557065 GGTAGGCATTTGAAAGATCCGTTATCGATACAAAATCATACGA-TCTGTAAGTTGTTTAG 557123 Query 271 AATCACCAAGGAGCCCCG------AAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT 324 | | | ||| | || |||| |||| | |||| ||||| ||| ||| | Sbjct 557124 AGT-TCGAAGAATATGCGATAAAAAAGGTCGTTTGGTTTTAGTCTAAAAAAAGCACAAAT 557182 Query 325 TCC-GAAGTCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 ||| ||| | |||| || ||||||| ||| ||||||| |||||| |||| |||| | Sbjct 557183 TCCATTGGTCCGTGTTTATATTGCATGTACTAGATCTAGAAATACCACAGTTACCCATCT 557242 Query 382 AGTAAGGTACT--ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 | | || | ||| || ||| | ||||||| ||| | || || || ||||| Sbjct 557243 A--ACTGTTATAGATCTAAAGAACCAAAACTGATAAAATAACCCTTTTGCGAACTCACT- 557299 Query 440 TATAGATTGCTT--ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 | || ||| ||| | ||||||||||||| | |||||||||| |||||||| || ||| Sbjct 557300 TTTA-ATT-CTTGCGTGCTTAGACATGCATAGTTTAATCTTTGCGACAAGCACATAGCTA 557357 Query 498 CTGGCAG 504 ||| ||| Sbjct 557358 CTGACAG 557364 >seq2 Length=5778943 Score = 129 bits (142), Expect = 2e-27 Identities = 123/156 (79%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 ||||||||||||| ||||||| |||||||| ||| | || ||| || || ||| Sbjct 2274735 TATTAGCTCTAGAGTTACCACAGTTATCCAACTAGCGATTAACGATCTAAGGGACCGTAA 2274794 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||| || || || ||||| | || | | ||||| ||| |||||||| Sbjct 2274795 CTGATATAATGAGCCTTTTGCGGTCTCACTTT-TAATTCGTGTATACATAGTCATGCATG 2274853 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||||| |||||| Sbjct 2274854 GCTTAATCTTTGAGACAAGCATGCGACTATTGGCAG 2274889 Score = 86.0 bits (94), Expect = 2e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 53 CACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112 ||||||||| ||| | |||| ||||| |||| ||||||||||||||| ||| ||||| | Sbjct 2274208 CACTACCTCACCGAGCTGGGAGTGGGTGATTTACGCGCCTGCTGCCTTTCTTAGATGTCG 2274267 Query 113 TAGCCGTTTCTC 124 |||||||||||| Sbjct 2274268 TAGCCGTTTCTC 2274279 >seq175 Length=569615 Score = 86.0 bits (94), Expect = 2e-14 Identities = 110/150 (73%), Gaps = 9/150 (6%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || ||| || | || ||||||||| ||| | ||| |||| ||||||| | ||||| Sbjct 534834 TAACTTACGCTCCAGGTGTCTTCCTTGGTTGTAGAAGCGGTTTTTCAGGCTTTCGCTCCG 534893 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT----ATCCTAC 194 |||||||||| | | | |||| || ||||| | || | || ||| || |||| Sbjct 534894 GAATCGAACCTTGA-TACCCGCCACACGTTGCAATCACGATA----ACTTCGAATACTAC 534948 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAA 224 | || | ||| |||||||| |||||||||| Sbjct 534949 CGTCAAGAGTCGATAGGGCCGAAATTTGAA 534978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510366695680