Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq66 188 2e-45
seq2 129 2e-27
seq175 86.0 2e-14
>seq66
Length=1145271
Score = 188 bits (208), Expect = 2e-45
Identities = 305/427 (71%), Gaps = 20/427 (5%)
Strand=Plus/Plus
Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150
|||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 556945 CTGCTGCCTTCCTTCGATGTGGTTGCCGTTTCTCAGGCTCCCTCTTCGAAATCGAACCCT 557004
Query 151 AATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAG 210
|||| |||||||||| ||| |||||| || || | |||||| ||| || ||||
Sbjct 557005 GATTCTTTTTTACCCGTTGCAACCGTGGTAGTCCTAAATACGACCATCAAAACTTAATAG 557064
Query 211 GGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATG 270
|| || ||||||| || || | || ||| ||| ||| || |||||| || |
Sbjct 557065 GGTAGGCATTTGAAAGATCCGTTATCGATACAAAATCATACGA-TCTGTAAGTTGTTTAG 557123
Query 271 AATCACCAAGGAGCCCCG------AAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT 324
| | | ||| | || |||| |||| | |||| ||||| ||| ||| |
Sbjct 557124 AGT-TCGAAGAATATGCGATAAAAAAGGTCGTTTGGTTTTAGTCTAAAAAAAGCACAAAT 557182
Query 325 TCC-GAAGTCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381
||| ||| | |||| || ||||||| ||| ||||||| |||||| |||| |||| |
Sbjct 557183 TCCATTGGTCCGTGTTTATATTGCATGTACTAGATCTAGAAATACCACAGTTACCCATCT 557242
Query 382 AGTAAGGTACT--ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439
| | || | ||| || ||| | ||||||| ||| | || || || |||||
Sbjct 557243 A--ACTGTTATAGATCTAAAGAACCAAAACTGATAAAATAACCCTTTTGCGAACTCACT- 557299
Query 440 TATAGATTGCTT--ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497
| || ||| ||| | ||||||||||||| | |||||||||| |||||||| || |||
Sbjct 557300 TTTA-ATT-CTTGCGTGCTTAGACATGCATAGTTTAATCTTTGCGACAAGCACATAGCTA 557357
Query 498 CTGGCAG 504
||| |||
Sbjct 557358 CTGACAG 557364
>seq2
Length=5778943
Score = 129 bits (142), Expect = 2e-27
Identities = 123/156 (79%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408
||||||||||||| ||||||| |||||||| ||| | || ||| || || |||
Sbjct 2274735 TATTAGCTCTAGAGTTACCACAGTTATCCAACTAGCGATTAACGATCTAAGGGACCGTAA 2274794
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468
||||| ||||||||| || || || ||||| | || | | ||||| ||| ||||||||
Sbjct 2274795 CTGATATAATGAGCCTTTTGCGGTCTCACTTT-TAATTCGTGTATACATAGTCATGCATG 2274853
Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||| ||||| ||||||
Sbjct 2274854 GCTTAATCTTTGAGACAAGCATGCGACTATTGGCAG 2274889
Score = 86.0 bits (94), Expect = 2e-14
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 53 CACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112
||||||||| ||| | |||| ||||| |||| ||||||||||||||| ||| ||||| |
Sbjct 2274208 CACTACCTCACCGAGCTGGGAGTGGGTGATTTACGCGCCTGCTGCCTTTCTTAGATGTCG 2274267
Query 113 TAGCCGTTTCTC 124
||||||||||||
Sbjct 2274268 TAGCCGTTTCTC 2274279
>seq175
Length=569615
Score = 86.0 bits (94), Expect = 2e-14
Identities = 110/150 (73%), Gaps = 9/150 (6%)
Strand=Plus/Plus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
||| || ||| || | || ||||||||| ||| | ||| |||| ||||||| | |||||
Sbjct 534834 TAACTTACGCTCCAGGTGTCTTCCTTGGTTGTAGAAGCGGTTTTTCAGGCTTTCGCTCCG 534893
Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT----ATCCTAC 194
|||||||||| | | | |||| || ||||| | || | || ||| || ||||
Sbjct 534894 GAATCGAACCTTGA-TACCCGCCACACGTTGCAATCACGATA----ACTTCGAATACTAC 534948
Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAA 224
| || | ||| |||||||| ||||||||||
Sbjct 534949 CGTCAAGAGTCGATAGGGCCGAAATTTGAA 534978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510366695680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |